Miyakogusa Predicted Gene
- Lj1g3v3388970.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3388970.1 tr|B4FR04|B4FR04_MAIZE Peptidyl-prolyl cis-trans
isomerase OS=Zea mays PE=2 SV=1,37.5,5e-19,no description,NULL;
seg,NULL; SUBFAMILY NOT NAMED,NULL; PEPTIDYL-PROLYL CIS-TRANS
ISOMERASE,Peptidy,CUFF.30617.1
(243 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma04g01700.2 290 6e-79
Glyma04g01700.1 286 1e-77
Glyma04g01700.3 226 1e-59
Glyma04g01700.4 149 3e-36
Glyma10g07290.1 100 1e-21
Glyma10g09260.1 74 2e-13
Glyma19g27940.1 74 2e-13
Glyma02g27130.1 73 3e-13
Glyma12g21180.1 64 1e-10
Glyma13g21210.1 61 1e-09
Glyma05g15660.1 55 7e-08
>Glyma04g01700.2
Length = 227
Score = 290 bits (743), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 164/244 (67%), Positives = 189/244 (77%), Gaps = 18/244 (7%)
Query: 1 MTSPGNCTCTCNSITLLGEKLSFXXXXXXXXXXVLSNLNLNPKAKSRGVVTVA-ALSPSQ 59
M+SP C+C C S ++ VLSN K +SR ++ A S
Sbjct: 1 MSSP--CSCACAST-------NWSVDYGYGGGGVLSN----SKVRSRRSKEISMAHSVCG 47
Query: 60 SRRSTAVLISLLPLTVDWLTTPPPAAARERRNKKNIPIDEYLTSPDGLKYYDLVEGKGSV 119
SRRSTA++IS LP +L+ PPA AR RNKK IP D+Y+TSPDGLKYYDLVEGKG V
Sbjct: 48 SRRSTALVISSLPFGFLFLS--PPAEAR--RNKKAIPEDQYITSPDGLKYYDLVEGKGPV 103
Query: 120 AEKGSTVQVHFDCLYRGVTAVSSRESKILAGNRTIAQPYEFKVGAPPGRERKRDFVDNPN 179
AEKG+TVQVHFDCLYRG+TAVSSRESK+LAGNR IAQPYEFKVGAPPG+ERKR+FVDNPN
Sbjct: 104 AEKGTTVQVHFDCLYRGITAVSSRESKLLAGNRIIAQPYEFKVGAPPGKERKREFVDNPN 163
Query: 180 GLFSAQASPKPPAAMYTIVEGMRVGGKRTVLVPPENGYGKRGMNEIPPGATFEMNIELLQ 239
GLFSAQA+PKPP A+Y IVEGMRVGGKRTV+VPPENGYG++GMNEIPPGATFE+N+ELLQ
Sbjct: 164 GLFSAQAAPKPPPAVYIIVEGMRVGGKRTVIVPPENGYGQKGMNEIPPGATFELNVELLQ 223
Query: 240 VKTT 243
V T
Sbjct: 224 VVAT 227
>Glyma04g01700.1
Length = 228
Score = 286 bits (732), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 164/245 (66%), Positives = 189/245 (77%), Gaps = 19/245 (7%)
Query: 1 MTSPGNCTCTCNSITLLGEKLSFXXXXXXXXXXVLSNLNLNPKAKSRGVVTVA-ALSPSQ 59
M+SP C+C C S ++ VLSN K +SR ++ A S
Sbjct: 1 MSSP--CSCACAST-------NWSVDYGYGGGGVLSN----SKVRSRRSKEISMAHSVCG 47
Query: 60 SRRSTAVLISLLPLTVDWLTTPPPAAARERRNKKNIPIDEYLTSP-DGLKYYDLVEGKGS 118
SRRSTA++IS LP +L+ PPA AR RNKK IP D+Y+TSP DGLKYYDLVEGKG
Sbjct: 48 SRRSTALVISSLPFGFLFLS--PPAEAR--RNKKAIPEDQYITSPADGLKYYDLVEGKGP 103
Query: 119 VAEKGSTVQVHFDCLYRGVTAVSSRESKILAGNRTIAQPYEFKVGAPPGRERKRDFVDNP 178
VAEKG+TVQVHFDCLYRG+TAVSSRESK+LAGNR IAQPYEFKVGAPPG+ERKR+FVDNP
Sbjct: 104 VAEKGTTVQVHFDCLYRGITAVSSRESKLLAGNRIIAQPYEFKVGAPPGKERKREFVDNP 163
Query: 179 NGLFSAQASPKPPAAMYTIVEGMRVGGKRTVLVPPENGYGKRGMNEIPPGATFEMNIELL 238
NGLFSAQA+PKPP A+Y IVEGMRVGGKRTV+VPPENGYG++GMNEIPPGATFE+N+ELL
Sbjct: 164 NGLFSAQAAPKPPPAVYIIVEGMRVGGKRTVIVPPENGYGQKGMNEIPPGATFELNVELL 223
Query: 239 QVKTT 243
QV T
Sbjct: 224 QVVAT 228
>Glyma04g01700.3
Length = 207
Score = 226 bits (577), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/209 (64%), Positives = 155/209 (74%), Gaps = 18/209 (8%)
Query: 1 MTSPGNCTCTCNSITLLGEKLSFXXXXXXXXXXVLSNLNLNPKAKSRGVVTVA-ALSPSQ 59
M+SP C+C C S ++ VLSN K +SR ++ A S
Sbjct: 1 MSSP--CSCACAST-------NWSVDYGYGGGGVLSN----SKVRSRRSKEISMAHSVCG 47
Query: 60 SRRSTAVLISLLPLTVDWLTTPPPAAARERRNKKNIPIDEYLTSPDGLKYYDLVEGKGSV 119
SRRSTA++IS LP +L+ PPA AR RNKK IP D+Y+TSPDGLKYYDLVEGKG V
Sbjct: 48 SRRSTALVISSLPFGFLFLS--PPAEAR--RNKKAIPEDQYITSPDGLKYYDLVEGKGPV 103
Query: 120 AEKGSTVQVHFDCLYRGVTAVSSRESKILAGNRTIAQPYEFKVGAPPGRERKRDFVDNPN 179
AEKG+TVQVHFDCLYRG+TAVSSRESK+LAGNR IAQPYEFKVGAPPG+ERKR+FVDNPN
Sbjct: 104 AEKGTTVQVHFDCLYRGITAVSSRESKLLAGNRIIAQPYEFKVGAPPGKERKREFVDNPN 163
Query: 180 GLFSAQASPKPPAAMYTIVEGMRVGGKRT 208
GLFSAQA+PKPP A+Y IVEGMRVGGK T
Sbjct: 164 GLFSAQAAPKPPPAVYIIVEGMRVGGKVT 192
>Glyma04g01700.4
Length = 146
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/157 (57%), Positives = 106/157 (67%), Gaps = 18/157 (11%)
Query: 1 MTSPGNCTCTCNSITLLGEKLSFXXXXXXXXXXVLSNLNLNPKAKSRGVVTVA-ALSPSQ 59
M+SP C+C C S ++ VLSN K +SR ++ A S
Sbjct: 1 MSSP--CSCACAST-------NWSVDYGYGGGGVLSN----SKVRSRRSKEISMAHSVCG 47
Query: 60 SRRSTAVLISLLPLTVDWLTTPPPAAARERRNKKNIPIDEYLTSPDGLKYYDLVEGKGSV 119
SRRSTA++IS LP +L+ PPA AR RNKK IP D+Y+TSPDGLKYYDLVEGKG V
Sbjct: 48 SRRSTALVISSLPFGFLFLS--PPAEAR--RNKKAIPEDQYITSPDGLKYYDLVEGKGPV 103
Query: 120 AEKGSTVQVHFDCLYRGVTAVSSRESKILAGNRTIAQ 156
AEKG+TVQVHFDCLYRG+TAVSSRESK+LAGNR IAQ
Sbjct: 104 AEKGTTVQVHFDCLYRGITAVSSRESKLLAGNRIIAQ 140
>Glyma10g07290.1
Length = 233
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 87/160 (54%), Gaps = 24/160 (15%)
Query: 84 AAARERRNKKNIPIDEYLTSPDGLKYYDLVEGKGSVAEKGSTVQVHFDCLYRGVTAVSSR 143
+ +R IP +Y T P+GLKYYDL G G+ A+KGS V +H+ ++ +T ++SR
Sbjct: 87 STSRRALRGAKIPESDYTTLPNGLKYYDLKVGNGAEAKKGSRVAIHYVAKWKSITFMTSR 146
Query: 144 ESKILAGNRTIAQPYEFKVGAPPGRERKRDFVDNPNGLFSAQASPKPPAAMYTIVEGMRV 203
+ + G PY F VG + +R V L V+GMRV
Sbjct: 147 QGMGVGG----GTPYGFDVG-----QSERGTVLKGLDLG---------------VQGMRV 182
Query: 204 GGKRTVLVPPENGYGKRGMNEIPPGATFEMNIELLQVKTT 243
GG+R ++VPPE YG +G+ EIPP +T E++IELL +K +
Sbjct: 183 GGQRLLIVPPELAYGSKGVQEIPPNSTIELDIELLSIKQS 222
>Glyma10g09260.1
Length = 48
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 39/46 (84%)
Query: 147 ILAGNRTIAQPYEFKVGAPPGRERKRDFVDNPNGLFSAQASPKPPA 192
++ G + +PYEF VGAPPG+ERK +FVDNPNGLFSAQA+PKPPA
Sbjct: 1 LMRGCFVLLKPYEFTVGAPPGKERKHEFVDNPNGLFSAQAAPKPPA 46
>Glyma19g27940.1
Length = 47
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 38/46 (82%)
Query: 147 ILAGNRTIAQPYEFKVGAPPGRERKRDFVDNPNGLFSAQASPKPPA 192
++ G + +PYEF VGAPPG+ERK FVDNPNGLFSAQA+PKPPA
Sbjct: 1 LMCGCFVLLKPYEFTVGAPPGKERKLQFVDNPNGLFSAQATPKPPA 46
>Glyma02g27130.1
Length = 50
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 39/47 (82%)
Query: 147 ILAGNRTIAQPYEFKVGAPPGRERKRDFVDNPNGLFSAQASPKPPAA 193
++ G + +PYEF VGAPPG+ERK +FVDNPNGLFSAQA+PKPP +
Sbjct: 1 LMHGCFVLLKPYEFIVGAPPGKERKHEFVDNPNGLFSAQAAPKPPTS 47
>Glyma12g21180.1
Length = 37
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 31/35 (88%)
Query: 158 YEFKVGAPPGRERKRDFVDNPNGLFSAQASPKPPA 192
YEF VGAPPG+ERK +FVDNP GLFS QA+PKPPA
Sbjct: 2 YEFIVGAPPGKERKHEFVDNPKGLFSTQAAPKPPA 36
>Glyma13g21210.1
Length = 91
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 37/46 (80%)
Query: 198 VEGMRVGGKRTVLVPPENGYGKRGMNEIPPGATFEMNIELLQVKTT 243
V+GMRVGG+R ++VPPE YG +G+ EIPP +T E++IELL +K +
Sbjct: 35 VQGMRVGGQRLLIVPPELAYGSKGVQEIPPNSTIELDIELLSIKQS 80
>Glyma05g15660.1
Length = 47
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 28/36 (77%)
Query: 148 LAGNRTIAQPYEFKVGAPPGRERKRDFVDNPNGLFS 183
+ G + +PYEF VGAPPG+ERK FVDNPNGLFS
Sbjct: 1 MRGCFVLLKPYEFTVGAPPGKERKLQFVDNPNGLFS 36