Miyakogusa Predicted Gene

Lj1g3v0116470.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0116470.1 Non Chatacterized Hit- tr|B9FA58|B9FA58_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,41.86,0.00000000004,CDC73,RNA polymerase II accessory factor,
Cdc73; seg,NULL; GB DEF: ARABIDOPSIS THALIANA GENOMIC
DNA,,CUFF.25246.1
         (392 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g01020.1                                                       647   0.0  

>Glyma11g01020.1 
          Length = 389

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/393 (79%), Positives = 343/393 (87%), Gaps = 5/393 (1%)

Query: 1   MDPLSALREFTMRGELDKIVKLNGEFRFGEEYSFPCSVETAYRSTKGNRYTLETLVHYVK 60
           MDPLSALREFTMRGE++KIV++N EFRFGEEY+FPC VETAYRSTKGNRYTLETLVHY++
Sbjct: 1   MDPLSALREFTMRGEVEKIVRVNAEFRFGEEYTFPCWVETAYRSTKGNRYTLETLVHYIQ 60

Query: 61  NHHLKHTEYFQNTFALGIPSVTLPDRKPILHYLQGTLASTDSIEYRPEDXXXXXXXXXXX 120
           NHHLKHTEY QNTFA+GIPSVTLPDRKP+L YLQGTL+S+DSIEYRP D           
Sbjct: 61  NHHLKHTEYIQNTFAVGIPSVTLPDRKPLLQYLQGTLSSSDSIEYRPHDDPSSFPAPKST 120

Query: 121 XXXXXXXXXNKPDDTEIDFMALIRAAEKPLKDRESLLECKNRDFYSVLVAATKREEERQR 180
                      P+D  +DF+++IR+AEKPLKDR+SLLECKNRDFYSVLV+ATKREEERQR
Sbjct: 121 PNPPSL----PPEDLNLDFISMIRSAEKPLKDRQSLLECKNRDFYSVLVSATKREEERQR 176

Query: 181 IESHQRKDGLVAKSRLMXXXXXXXX-XXXXXXXXPNPKPKMHLKGSKIGEGVPIILVPSA 239
           +ESHQRKDGLVAKSRLM                 P PKPKMHLKG+KIGEGVPIILVPSA
Sbjct: 177 MESHQRKDGLVAKSRLMGSDDRGLGFSDDMGGYDPTPKPKMHLKGTKIGEGVPIILVPSA 236

Query: 240 FQTLITIYNVKEFLEDGIYIPTDVKVKQMKGTRPDCVTVQKKLSRDRVVAAYEVRDKPST 299
           FQTLITIYNVKEFLEDG+YIPTDVKVKQMKG RPDCVTVQKKLSRDRVV AYEVRDKPST
Sbjct: 237 FQTLITIYNVKEFLEDGVYIPTDVKVKQMKGARPDCVTVQKKLSRDRVVTAYEVRDKPST 296

Query: 300 LKPEDWDRVVAVFVLGKEWQFKEWPFKDHVEIFNKIIGFFIRFEDDSMESVKTVKQWNVK 359
           LKP+DWDRVVAVFVLGKEWQFK+WPFKDHVEIFNKIIGFF+RFEDDS+ES KTVKQWNVK
Sbjct: 297 LKPDDWDRVVAVFVLGKEWQFKDWPFKDHVEIFNKIIGFFMRFEDDSLESCKTVKQWNVK 356

Query: 360 IISISKNKRHQDRAAALDVWDRLEEFVRSRSHS 392
           IISISKNKRHQDRAAALDVW+RLE+FVR+RSHS
Sbjct: 357 IISISKNKRHQDRAAALDVWERLEDFVRARSHS 389