Miyakogusa Predicted Gene

Lj0g3v0352249.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0352249.1 tr|G7I8G1|G7I8G1_MEDTR Replication factor C large
subunit OS=Medicago truncatula GN=MTR_1g030410 PE=,65.4,0,seg,NULL;
P-loop containing nucleoside triphosphate hydrolases,NULL; Rad17,NULL;
no description,NULL,CUFF.24230.1
         (911 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g11830.1                                                       827   0.0  
Glyma04g42920.1                                                       755   0.0  
Glyma13g03190.1                                                       198   2e-50
Glyma14g23550.1                                                       129   2e-29

>Glyma06g11830.1 
          Length = 1190

 Score =  827 bits (2135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/956 (51%), Positives = 603/956 (63%), Gaps = 118/956 (12%)

Query: 6    RSCQN-------KAEGSLWINKYKPTKATEVCGNSESLNFLRDWLHLWRGGRYHSRKDSS 58
            RS QN       KAE SLW  KYKPTKA EVCGN ES+NFLRDWLHLW   RY SRKD S
Sbjct: 294  RSLQNESQKIAYKAENSLWTYKYKPTKAVEVCGNDESVNFLRDWLHLWHERRYKSRKDIS 353

Query: 59   TWDQSYIQXXXXXXXXXXXXXALKDINEEDSLENVLLITGPVGSGKSAAVYACAEEQGFE 118
              D+S ++               +DINEEDSL+NVLLITGP+GSGKSAAVYACAEEQ FE
Sbjct: 354  DMDKSDMRDVDDDYKCSCSDYDSEDINEEDSLQNVLLITGPIGSGKSAAVYACAEEQRFE 413

Query: 119  VLELNASDYRNGAAVKQYFGEALETHGFKR---LLEQAV--------------------- 154
            +LELNASD RNG AV+ YFG+ L + GFKR   LL Q +                     
Sbjct: 414  ILELNASDCRNGTAVRNYFGDTLGSLGFKRFANLLYQCLPIASNLLELITHCKKLLLTCS 473

Query: 155  ------------------SSQNKTVKFPPAPTSPNGKAAEEIYDGVIDLTTSSNDGVHSP 196
                              SSQ KT K  PA    +GKAA+E+ DGV +L T S+D  H P
Sbjct: 474  AIIYYLMCIYFRASEITSSSQKKTTKLSPASALQSGKAADEVNDGVNELITISDDEAHIP 533

Query: 197  GGKSQRLHEKNNVFTCHSVQTLILVEDVDILFPEDHGCIAAIKHIAETAKGPIILTSNSN 256
             G SQ+L  KNN              DVDIL PED GCIAAI+ IAETAKGPIILTSNS 
Sbjct: 534  SGSSQKLLGKNN--------------DVDILSPEDRGCIAAIQQIAETAKGPIILTSNSV 579

Query: 257  NVALPGSFIRLHVSFSLPLPDELLCHLYMVCVTEEVNISPHLLKKFIQSCDGDIRKTIMH 316
            N  LPG+F  LHVSF LP P ELLCHLY VC+TE VNI P LL+KFI SCDGDIRK+IMH
Sbjct: 580  NPGLPGNFDVLHVSFMLPSPQELLCHLYTVCLTEGVNIHPLLLEKFIHSCDGDIRKSIMH 639

Query: 317  LQFWFQNXXXXXXXXXXXXXSSLPFDLEAGHELLPKILPWSFPSELPKLIEKEVSKSVTL 376
            LQFWFQ               S  F    GH++LPKI+PW FPSE+ +LIE E++K   +
Sbjct: 640  LQFWFQ---------------SKRFQKALGHQILPKIMPWDFPSEISELIENEIAKLTNI 684

Query: 377  MEENPCLQGLVEEE-LQINKKHNDLGVQCIVTD---EANVEM-KRKRSIADCNEFESQCS 431
            MEEN   +GLV EE L IN++ NDL VQC+  D      VEM KR  S+ D +E E Q +
Sbjct: 685  MEENS--RGLVTEELLPINEQQNDLNVQCMEADYIEAKKVEMIKRNGSLTDYSELEIQYN 742

Query: 432  AMSELSNCYGSPLTPSRQMGPKKLAVMSSESEDKYPNYGHSLNIHHEDYKRQSLEGNSES 491
            A+SE SN  GSPLT SR  G +KL VMSS+SED+  N G+ ++ H E   RQS++ N+  
Sbjct: 743  AISEFSNSSGSPLTSSRHNGRRKLVVMSSDSEDEDSNNGYPVDTHEEANTRQSMKENNGY 802

Query: 492  SCKFELNQSYTSMSFCKLVCSGLENSEEQS-NYLETSYGAWLDETHKSLNISSFQESMII 550
              + +LN +Y S S  KL+CS LE+SEE+   Y ET+   +++ET KSL++S   ES  +
Sbjct: 803  PSELQLNGNYPSTSVRKLLCSELEHSEEEHFKYSETTDDTYVNETCKSLDVSCVPESTFV 862

Query: 551  PETATENRTQTLSAAVSSGHLAGPIEVSPDNALTPFTFSVCQRIARLPQNLDSLVNTEIP 610
            PET  EN T+++  AVSSG L GP EVS  N L PFTFSV + + +L QNLD L++TEI 
Sbjct: 863  PETEIENGTESMYEAVSSGPLFGPQEVSVYNELKPFTFSVPRHLTKLSQNLD-LLDTEIS 921

Query: 611  ESSPKVSVQDFRDENRETTTVYNMMGECSHEEFNLKLNFVESSPSMEIDMIQNLWRRLLD 670
            + S K   QD  DE+ E  T+ N+M ECS  +F LK   ++S+   E + IQ LW  LL+
Sbjct: 922  DHSCKGVQQDVLDEHME--TIVNVMDECSRVDFKLKPTCLQSNSFAETEKIQKLWGDLLE 979

Query: 671  CKTDLRQNATSEQEGAIQVVKLASELTNLISEVDVLFRNHQQEQCGIMEPPIFLSDEATY 730
            C+ DLRQ+ATSEQ GA QVV+LAS L NLISE D+    H+++   IMEP  FLS E T 
Sbjct: 980  CRMDLRQHATSEQLGAFQVVRLASGLNNLISEADLF---HERD---IMEPSAFLSGETTS 1033

Query: 731  SWYDEQMMMSTVAMHGFCFYAKHISDMGSKLGCENRVDVTSEMLASTTNIMALGKLSRQD 790
              Y EQ+M ST+A HGFCFYAK I+D  SKLGC N VD+TSEMLAST       KL+ QD
Sbjct: 1034 IRYHEQIMTSTIAEHGFCFYAKLIADEASKLGCANCVDITSEMLASTI------KLTGQD 1087

Query: 791  HTKSLSNNTTKELD---DMKSMQYNENRKSLFNVIQSIVPARLSLAMKGIAFNEYLSSLR 847
              +S    T K+++    + + Q +EN+ S F  IQSIVPAR+ LA+KG  FNEYLSSLR
Sbjct: 1088 LARSKVIYTGKQVEWNSPINNTQKSENKTSQFEAIQSIVPARIYLALKGDVFNEYLSSLR 1147

Query: 848  QISVSEDIRMSQGAKKMRKGRPRGAHYLSRGKMFSPEDISLVCEGDLYRKISSQYT 903
            QIS +E  R SQG +K R+GR R              DISLV EG+LYRK S+Q+T
Sbjct: 1148 QISRAEASRSSQGVEKKRRGRVR--------------DISLVSEGNLYRKNSTQHT 1189


>Glyma04g42920.1 
          Length = 990

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/869 (51%), Positives = 541/869 (62%), Gaps = 130/869 (14%)

Query: 11  KAEGSLWINKYKPTKATEVCGNSESLNFLRDWLHLWRGGRYHSRKDSSTWDQSYIQXXXX 70
           KAE SLW  KYKPTKA EVCGN ES+NFLRDWLHLW   RY SRKD S  D+S ++    
Sbjct: 232 KAENSLWTYKYKPTKAVEVCGNDESVNFLRDWLHLWHERRYKSRKDISDMDKSDMRDVGD 291

Query: 71  XXXXXXXXXA---LKDINEEDSLENVLLITGPVGSGKSAAVYACAEEQGFEVLELNASDY 127
                    +    +DINEEDSL+NVLLITGP+GSGKSAAVYACAEEQGFE+LELNASD 
Sbjct: 292 DDDDYKCSYSDYDSEDINEEDSLQNVLLITGPIGSGKSAAVYACAEEQGFEILELNASDC 351

Query: 128 RNGAAVKQYFGEALETHGFKRLLEQAVSSQNKTVKFPPAPTSPNGKAAEEIYDGVIDLTT 187
           RNG AV+ YFG+AL + GFK                       +GKAA+E+ DGV +L T
Sbjct: 352 RNGTAVRNYFGDALGSLGFK-----------------------SGKAADEVNDGVDELIT 388

Query: 188 SSNDGVHSPGGKSQRLHEKNNVF-TCHSVQTLILVEDVDILFPEDHGCIAAIKHIAETAK 246
             +D  H P G  Q+L  KNNV  +C  VQTLIL+EDVDIL PED GCIAAI+ IAETAK
Sbjct: 389 IPDDEAHIPSGSLQKLLGKNNVVASCDKVQTLILIEDVDILSPEDRGCIAAIQQIAETAK 448

Query: 247 GPIILTSNSNNVALPGSFIRLHVSFSLPLPDELLCHLYMVCVTEEVNISPHLLKKFIQSC 306
           GPIILTSNS+N  LP +F  LHVSF LP P ELLCHLY VC+TE VNI P LL+KFI SC
Sbjct: 449 GPIILTSNSDNPGLPDNFDVLHVSFVLPSPKELLCHLYTVCLTEGVNIHPLLLEKFIHSC 508

Query: 307 DGDIRKTIMHLQFWFQNXXXXXXXXXXXXXSSLPFDLEAGHELLPKILPWSFPSELPKLI 366
           DGDIRK+IMHLQFWFQ+              +LP   + GH++LPKI+PW FPSE+ KLI
Sbjct: 509 DGDIRKSIMHLQFWFQD------------PPTLP---QLGHQILPKIMPWDFPSEISKLI 553

Query: 367 EKEVSKSVTLMEENPCLQGLVEEELQINKKHNDLGVQCIVTD---EANVEM-KRKRSIAD 422
           E E++KS   MEE    +GLV E L  +++ NDL VQC+  D      VEM KR  S+ D
Sbjct: 554 ENEITKSTNKMEETS--RGLVTELLHTDEQKNDLNVQCMEADYIEAKKVEMIKRNSSLTD 611

Query: 423 CNEFESQCSAMSELSNCYGSPLTPSRQMGPKKLAVMSSESEDKYPNYGHSLNIHHEDYKR 482
            +E E Q +A+SE +N   SPLT  RQ G +KL                           
Sbjct: 612 YSELEIQYNAISEFANSSDSPLTSCRQNGRRKL--------------------------- 644

Query: 483 QSLEGNSESSCKFELNQSYTSMSFCKLVC-SGLENSEEQSNYLETSYGAWLDETHKSLNI 541
                        +LN +Y S +  KLVC     + EE   Y ET+    L+ET KSL+ 
Sbjct: 645 ------------LQLNGNYPSTTLRKLVCSEFEHSEEEHFKYSETADDTCLNETCKSLDA 692

Query: 542 SSFQESMIIPETATENRTQTLSAAVSSGHLAGP--IEVSPDNALTPFTFSVCQRIARLPQ 599
           S   ES  +PET  EN T+++S AVSSG L GP   EVS +N L PF   V +R+ +L Q
Sbjct: 693 SCVPESTFVPETEIENGTESISGAVSSGPLVGPQDQEVSVNNELKPFC--VRRRLTKLSQ 750

Query: 600 NLDSLVNTEIPESSPKVSVQDFRDENRETTTVYNMMGECSHEEFNLKLNFVESSPSMEID 659
           N D L++TEI + SPK  +QD  DE+ E  T+ N+M ECS  +F  K  F++S+P  E +
Sbjct: 751 NPD-LLDTEISDHSPKGVLQDVLDEHIE--TIVNVMDECSRVDFKAKPMFLQSNPLTETE 807

Query: 660 MIQNLWRRLLDCKTDLRQNATSEQEGAIQVVKLASELTNLISEVDVLFRNHQQEQCGIME 719
            IQ LW+ L + + DL+Q+ATSEQ GA QVVKLAS L NLISE D+    H+++   IME
Sbjct: 808 KIQKLWKDLRERRMDLKQHATSEQLGAFQVVKLASGLNNLISEADLF---HKRD---IME 861

Query: 720 PPIFLSDEATYSWYDEQMMMSTVAMHGFCFYAKHISDMGSKLGCENRVDVTSEMLASTTN 779
           P  FLS EAT SWY EQ+M STVA HGFCFYAK I+D  SKLGC N VD+TSEMLAS   
Sbjct: 862 PSTFLSGEATSSWYHEQIMTSTVAEHGFCFYAKLIADEASKLGCANCVDITSEMLASAI- 920

Query: 780 IMALGKLSRQDHTKSLSNNTTKELDDMKSMQYNENRKSLFNVIQSIVPARLSLAMKGIAF 839
                KLS QD T                       KS F  IQSIVPAR+SLA+KG AF
Sbjct: 921 -----KLSGQDLT-----------------------KSKFKAIQSIVPARISLALKGGAF 952

Query: 840 NEYLSSLRQISVSEDIRMSQGAKKMRKGR 868
           NEYLSSLR+I+ SE  R+SQ  +K R+GR
Sbjct: 953 NEYLSSLREITRSEASRISQEVEKNRRGR 981


>Glyma13g03190.1 
          Length = 301

 Score =  198 bits (503), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 100/129 (77%), Positives = 109/129 (84%), Gaps = 7/129 (5%)

Query: 195 SPGGKSQRLHEKNNVFTCHSVQTLILVEDVDILFPEDHGCIAAIKHIAETAKGPIILTSN 254
           S GG S RLH K+NVFTC SVQTLILVEDVD+LF ED GCIAAI+HI+ETAKGPIILTSN
Sbjct: 63  SHGGISPRLHGKSNVFTCGSVQTLILVEDVDMLFLEDRGCIAAIQHISETAKGPIILTSN 122

Query: 255 SNNVALPGSFIRLHVSFSLPLPDELLCHLYMVCVTEEVNISPHLLKKFIQSCDGDIRKTI 314
           +       SF RLHVSFSLPL DELL H+YMVCVTEE+N +P LLKKFIQSCDGDIRKTI
Sbjct: 123 N-------SFARLHVSFSLPLLDELLSHMYMVCVTEELNNNPLLLKKFIQSCDGDIRKTI 175

Query: 315 MHLQFWFQN 323
           M LQFWFQ+
Sbjct: 176 MQLQFWFQS 184


>Glyma14g23550.1 
          Length = 398

 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/101 (62%), Positives = 71/101 (70%)

Query: 1   MASYYRSCQNKAEGSLWINKYKPTKATEVCGNSESLNFLRDWLHLWRGGRYHSRKDSSTW 60
           M SYY SC+ KAE SLWI+KYKPTKA EVCGN E++NFLRDWLHLW   RY  RK SS  
Sbjct: 269 MRSYYHSCKGKAESSLWIHKYKPTKAFEVCGNEEAMNFLRDWLHLWHERRYPCRKGSSNR 328

Query: 61  DQSYIQXXXXXXXXXXXXXALKDINEEDSLENVLLITGPVG 101
           DQS  Q             A +DINE+DSL+NVLLITGP+G
Sbjct: 329 DQSNRQDDGDNYICSDSDYASEDINEKDSLQNVLLITGPIG 369