Miyakogusa Predicted Gene

Lj0g3v0290279.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0290279.1 tr|Q793C9|Q793C9_MOUSE U2 small nuclear
ribonucleoprotein auxiliary factor (U2AF) 1, related
sequenc,42.86,8e-19,U2AUXFACTOR,U2 auxiliary factor small subunit;
zinc finger,Zinc finger, CCCH-type; seg,NULL; U2 SNRN,CUFF.19402.1
         (281 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g17310.1                                                       328   6e-90
Glyma15g39220.1                                                       287   1e-77
Glyma12g30590.2                                                        62   7e-10
Glyma12g30590.1                                                        62   7e-10
Glyma03g34840.1                                                        61   1e-09
Glyma19g37530.1                                                        61   1e-09
Glyma20g00950.1                                                        57   2e-08
Glyma07g20090.2                                                        57   2e-08
Glyma07g20090.1                                                        57   2e-08

>Glyma08g17310.1 
          Length = 561

 Score =  328 bits (840), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 173/278 (62%), Positives = 190/278 (68%), Gaps = 42/278 (15%)

Query: 31  ASVLILISVHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINL 90
              L    + +F+VCKNGSFHLRGNVYVQYK LDSALLAYN+VNGRYFAGKQVSC+F+NL
Sbjct: 264 TEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKSLDSALLAYNTVNGRYFAGKQVSCQFVNL 323

Query: 91  TRWKVAICGEYMKSGFKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWVRKMAALFG 150
           TRWKVAICGEYMKSGFKTCSHGT CNFIHCFRNPGGDYEWADSDKPPPKFWV+KM ALFG
Sbjct: 324 TRWKVAICGEYMKSGFKTCSHGTTCNFIHCFRNPGGDYEWADSDKPPPKFWVKKMIALFG 383

Query: 151 YSDDYEILREQGNLSGQSYRNMSKTXXXX-------------------XXXXXXXXGEMD 191
           YSDDYE   EQGN+S      +SKT                                EMD
Sbjct: 384 YSDDYETSMEQGNMS------LSKTDSDRWKFELFNVLIYLFYHILTCHSRRRSRSREMD 437

Query: 192 QLNSGYSDRRKHEDERNQRTPNEG------KKRRDRTPDTD--SDKEWLEEEEDRVKHHR 243
           QLN G+S RRK  DER  RTPNE       +K R RTPD+   SD+EWLE+EE+R  HH 
Sbjct: 438 QLNCGHSGRRKQRDERKHRTPNEDWNGSFKRKSRGRTPDSGAVSDREWLEKEENRETHHE 497

Query: 244 YTRKSSINKNNKRSHEEDSDVDWTTKTRGNKKQHDREG 281
           YT        N R HEEDSDV+W   TR N+KQH REG
Sbjct: 498 YTM-------NSRRHEEDSDVEWV--TRDNEKQHGREG 526


>Glyma15g39220.1 
          Length = 530

 Score =  287 bits (734), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 157/263 (59%), Positives = 175/263 (66%), Gaps = 47/263 (17%)

Query: 34  LILISVHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRW 93
           L    V +F+VCKNGSFH RGNVYVQYK LDSALLAYNSVNGRYFAGKQVSC+F+NLTRW
Sbjct: 249 LKFGEVVNFKVCKNGSFHWRGNVYVQYKSLDSALLAYNSVNGRYFAGKQVSCQFVNLTRW 308

Query: 94  KVAICGEYMKSGFKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWVRKMAALFGYSD 153
           KVAICGEYMKSGFKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWV+KM  LFG+SD
Sbjct: 309 KVAICGEYMKSGFKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWVKKMITLFGFSD 368

Query: 154 DYEILREQGNLSGQSYRNMSKTXXXXXXXXXXXXGEMDQLNSGYSDRRKHEDERNQRTP- 212
           DYE  REQGNL+G                               S RRK +DE   RTP 
Sbjct: 369 DYETSREQGNLNG-----------------------------SLSCRRKQQDETKHRTPD 399

Query: 213 -----NEGKKRRDRTPDTDSDK--EWLEEEEDRVKHHRYT-------RKSSI--NKNNKR 256
                N  +K R RTPD+DSD   EWLE+EE+R +HH YT       RK +I   K N +
Sbjct: 400 KDWNANFKRKSRGRTPDSDSDSDWEWLEKEENRERHHVYTLNSGAEMRKGTILAKKKNNQ 459

Query: 257 SHEEDSDVDWTTKTRGN-KKQHD 278
              + S+ D     RG  + QHD
Sbjct: 460 GGGDASESDKDLLGRGEMETQHD 482


>Glyma12g30590.2 
          Length = 315

 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 39  VHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAIC 98
           +    VC N + H+ GNVYVQ++  + A  A  ++ GR++AG+ +  +F  +T ++ A C
Sbjct: 95  IESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLTGRFYAGRPIIVDFSPVTDFREATC 154

Query: 99  GEYMKSGFKTCSHGTACNFIHCFR 122
            +Y ++   TC+ G  CNF+H  R
Sbjct: 155 RQYEEN---TCNRGGYCNFMHLKR 175


>Glyma12g30590.1 
          Length = 315

 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 39  VHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAIC 98
           +    VC N + H+ GNVYVQ++  + A  A  ++ GR++AG+ +  +F  +T ++ A C
Sbjct: 95  IESLNVCDNLADHMVGNVYVQFREEEHAANAVRNLTGRFYAGRPIIVDFSPVTDFREATC 154

Query: 99  GEYMKSGFKTCSHGTACNFIHCFR 122
            +Y ++   TC+ G  CNF+H  R
Sbjct: 155 RQYEEN---TCNRGGYCNFMHLKR 175


>Glyma03g34840.1 
          Length = 314

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 39  VHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAIC 98
           +    +C N + H+ GNVYVQ++  D A  A  ++ GR+++G+ +  +F  +T ++ A C
Sbjct: 99  IQSLNICDNLADHMVGNVYVQFREEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATC 158

Query: 99  GEYMKSGFKTCSHGTACNFIH 119
            +Y ++    C+ G  CNF+H
Sbjct: 159 RQYEEN---VCNRGGYCNFMH 176


>Glyma19g37530.1 
          Length = 314

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 39  VHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAIC 98
           +    +C N + H+ GNVYVQ++  D A  A  ++ GR+++G+ +  +F  +T ++ A C
Sbjct: 99  IQSLNICDNLADHMVGNVYVQFREEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATC 158

Query: 99  GEYMKSGFKTCSHGTACNFIH 119
            +Y ++    C+ G  CNF+H
Sbjct: 159 RQYEEN---VCNRGGYCNFMH 176


>Glyma20g00950.1 
          Length = 268

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 39  VHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAIC 98
           +    VC N + H+ GNVYVQ++  D A  A +++ GR++  + +  +F  +T ++ A C
Sbjct: 95  IESLNVCDNLADHMIGNVYVQFREEDQAAKALHALRGRFYNARPIIADFSPVTDFREATC 154

Query: 99  GEYMKSGFKTCSHGTACNFIH 119
            ++ ++   +C+ G  CNF+H
Sbjct: 155 RQFEEN---SCNRGGYCNFMH 172


>Glyma07g20090.2 
          Length = 271

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 39  VHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAIC 98
           +    VC N + H+ GNVYVQ++  D A  A ++++GR++  + +  +F  +T ++ A C
Sbjct: 95  IESLNVCDNLADHMIGNVYVQFREEDQAAKALHALHGRFYNARPIIADFSPVTDFREATC 154

Query: 99  GEYMKSGFKTCSHGTACNFIH 119
            ++ ++   +C+ G  CNF+H
Sbjct: 155 RQFEEN---SCNRGGYCNFMH 172


>Glyma07g20090.1 
          Length = 271

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 39  VHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAIC 98
           +    VC N + H+ GNVYVQ++  D A  A ++++GR++  + +  +F  +T ++ A C
Sbjct: 95  IESLNVCDNLADHMIGNVYVQFREEDQAAKALHALHGRFYNARPIIADFSPVTDFREATC 154

Query: 99  GEYMKSGFKTCSHGTACNFIH 119
            ++ ++   +C+ G  CNF+H
Sbjct: 155 RQFEEN---SCNRGGYCNFMH 172