Miyakogusa Predicted Gene

Lj0g3v0271879.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0271879.2 Non Chatacterized Hit- tr|K3Z2A8|K3Z2A8_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si020676,60.26,3e-19,Pcc1,EKC/KEOPS complex, subunit
Pcc1,CUFF.17975.2
         (97 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g17990.1                                                       143   5e-35
Glyma17g29540.1                                                       136   5e-33
Glyma14g16690.1                                                       124   3e-29
Glyma14g16960.1                                                       122   8e-29

>Glyma11g17990.1 
          Length = 91

 Score =  143 bits (360), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 69/87 (79%), Positives = 77/87 (88%)

Query: 11 SQRQFTCDLEVDFGCEENASIVYAALAVDKELHPDKVTQLMKVSNGKLSVHFEAVEARFL 70
           Q +F+CD+E+ FG EENASIVYAALAVDKEL PDKV +LM VS+GKLSVHFEA EARFL
Sbjct: 5  PQWEFSCDMEMYFGSEENASIVYAALAVDKELQPDKVKRLMTVSDGKLSVHFEATEARFL 64

Query: 71 RASFSAFLDVLTLATNTIEEFGQGMEL 97
          RASFSAF+DVLTLAT TIEEFGQ M+L
Sbjct: 65 RASFSAFVDVLTLATKTIEEFGQVMKL 91


>Glyma17g29540.1 
          Length = 89

 Score =  136 bits (343), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 68/87 (78%), Positives = 76/87 (87%), Gaps = 2/87 (2%)

Query: 11 SQRQFTCDLEVDFGCEENASIVYAALAVDKELHPDKVTQLMKVSNGKLSVHFEAVEARFL 70
           Q +F+CD+E+ FG EENASIVYAALAVDKE  PDKV +LM VS+GKLSVHFEA EARFL
Sbjct: 5  PQWEFSCDMEMYFGSEENASIVYAALAVDKE--PDKVKRLMTVSDGKLSVHFEATEARFL 62

Query: 71 RASFSAFLDVLTLATNTIEEFGQGMEL 97
          RASFSAF+DVLTLAT TIEEFGQ M+L
Sbjct: 63 RASFSAFVDVLTLATKTIEEFGQVMKL 89


>Glyma14g16690.1 
          Length = 73

 Score =  124 bits (310), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/80 (77%), Positives = 68/80 (85%), Gaps = 7/80 (8%)

Query: 18 DLEVDFGCEENASIVYAALAVDKELHPDKVTQLMKVSNGKLSVHFEAVEARFLRASFSAF 77
          D+E+DFG EENASIVYAALAVDKEL PDKV +LM       +VHFEA EARFLRASFSAF
Sbjct: 1  DMEMDFGSEENASIVYAALAVDKELQPDKVKRLM-------TVHFEATEARFLRASFSAF 53

Query: 78 LDVLTLATNTIEEFGQGMEL 97
          +DVLTLAT TIEEFGQGM+L
Sbjct: 54 VDVLTLATKTIEEFGQGMKL 73


>Glyma14g16960.1 
          Length = 73

 Score =  122 bits (306), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 61/80 (76%), Positives = 68/80 (85%), Gaps = 7/80 (8%)

Query: 18 DLEVDFGCEENASIVYAALAVDKELHPDKVTQLMKVSNGKLSVHFEAVEARFLRASFSAF 77
          D+E+DFG EENASIVYAALAVDKEL PDKV +LM       +VHFEA +ARFLRASFSAF
Sbjct: 1  DMEMDFGSEENASIVYAALAVDKELQPDKVKRLM-------TVHFEATKARFLRASFSAF 53

Query: 78 LDVLTLATNTIEEFGQGMEL 97
          +DVLTLAT TIEEFGQGM+L
Sbjct: 54 VDVLTLATKTIEEFGQGMKL 73