Miyakogusa Predicted Gene

Lj0g3v0234229.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0234229.3 tr|G7JRF4|G7JRF4_MEDTR ATP-dependent DNA helicase
PIF1 OS=Medicago truncatula GN=MTR_4g036250 PE=4
S,53.59,0,UNCHARACTERIZED,NULL; seg,NULL,CUFF.15325.3
         (322 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g12420.1                                                        87   3e-17
Glyma20g16580.1                                                        59   5e-09

>Glyma13g12420.1 
          Length = 681

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 63/101 (62%), Gaps = 1/101 (0%)

Query: 168 LVKDLTEMIDIHNPVAKLFRRVRDFANHNEGSNFYLRLFRRRNKDPRVYNLLTSDEVAGL 227
           +V  L+ M+D HN  AK FR  RD    ++ +N  L+L   R KD RVYN+    E+A L
Sbjct: 182 IVSALSHMLDQHNSHAKSFRMARDRLAADQANNIKLQLIAARGKDGRVYNMPNVPEIAAL 241

Query: 228 IVGDIENLEAGRDIIVKKQSGELVRIPEYHVSFLPLQDEIP 268
           IVGD  +  + RDIIV+ Q+GEL RI E H S+LPLQ  +P
Sbjct: 242 IVGDF-HPGSKRDIIVETQNGELQRIHELHPSYLPLQYPLP 281


>Glyma20g16580.1 
          Length = 197

 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 6/95 (6%)

Query: 6   EVEAELLDFGDATYTCGYCNSIMWYEERSEKSRQPLNPEFSICCMRGKVDXXXXXXXXXX 65
              +E  D GD    C YC ++MW++ER  K+R   N  F +CC  GK+           
Sbjct: 107 HTASEYFDLGDPLMMCQYCEALMWHQERIHKNRHTPNHTFHLCCGDGKMQQPFLKTPPLI 166

Query: 66  XXXXISGVDPRSKNFKENIRAYNSLFSFTSLGGKI 100
               +        NF+++IR YN +F+F   G K+
Sbjct: 167 LQHLLFD------NFQQHIRTYNLMFAFILPGVKL 195