Miyakogusa Predicted Gene
- Lj0g3v0227459.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0227459.3 Non Chatacterized Hit- tr|I1H9E8|I1H9E8_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,49.48,5e-19,Ribonuclease H-like,Ribonuclease H-like domain;
SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL,CUFF.14833.3
(121 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma08g10320.1 91 3e-19
Glyma19g24990.1 86 7e-18
Glyma04g34950.1 83 9e-17
Glyma0022s00450.1 81 3e-16
Glyma07g11400.1 80 5e-16
Glyma07g13770.1 79 2e-15
Glyma15g15880.1 77 3e-15
Glyma01g26960.1 75 2e-14
Glyma15g20070.1 75 2e-14
Glyma11g33640.1 74 3e-14
Glyma11g26100.1 74 3e-14
Glyma05g20260.1 74 4e-14
Glyma02g34750.1 73 6e-14
Glyma09g15130.2 72 1e-13
Glyma18g15670.1 70 4e-13
Glyma04g13970.1 69 2e-12
Glyma15g29970.1 67 4e-12
Glyma03g25710.1 60 6e-10
Glyma18g38460.1 53 7e-08
Glyma07g03280.1 53 7e-08
Glyma06g41540.1 50 5e-07
Glyma10g23870.1 50 7e-07
Glyma15g31510.1 49 1e-06
Glyma11g17510.1 46 9e-06
>Glyma08g10320.1
Length = 736
Score = 90.9 bits (224), Expect = 3e-19, Method: Composition-based stats.
Identities = 45/105 (42%), Positives = 61/105 (58%)
Query: 7 FLNGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKANI 66
LNG+H+H+RC HILN +V D L+ +D + RIR A KYVR R FK C + ANI
Sbjct: 301 LLNGEHVHLRCCTHILNSIVSDGLQEMDCCIARIRAACKYVRSFSSRYACFKRCANLANI 360
Query: 67 EYKSLVFIDCEMRWNLTYLVLEAALKHQNAFEELQLHDPKFVDEL 111
++ +D +WN TYL+L A K + AF L+ D +V L
Sbjct: 361 NCDQMIVLDEPTKWNSTYLMLVVAEKFEKAFNLLEFEDDSYVKSL 405
>Glyma19g24990.1
Length = 443
Score = 86.3 bits (212), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 54/83 (65%)
Query: 7 FLNGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKANI 66
LNG +HMRCFAHILNL+V D LK ID + +IR K+V+ S R FK C ++ N+
Sbjct: 191 LLNGGFMHMRCFAHILNLIVNDGLKEIDLSIRKIRFICKFVKSSPRRFASFKRCDEEVNV 250
Query: 67 EYKSLVFIDCEMRWNLTYLVLEA 89
K+++ +D RWN TYL+L+
Sbjct: 251 STKAMLILDVPTRWNSTYLMLDG 273
>Glyma04g34950.1
Length = 680
Score = 82.8 bits (203), Expect = 9e-17, Method: Composition-based stats.
Identities = 45/99 (45%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Query: 10 GDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDK-ANIEY 68
G+ H++C AHILNL+V++ LKV V +IR +IKYV+ S GRM+ FK CV K I
Sbjct: 320 GEFFHIQCCAHILNLIVQEGLKVAGPSVNKIRESIKYVKGSEGRMQVFKACVAKVGGIHT 379
Query: 69 KSLVFIDCEMRWNLTYLVLEAALKHQNAFEELQLHDPKF 107
K + +D RWN T+L+LE+AL ++ AF L D +
Sbjct: 380 KMGLRLDVITRWNSTFLMLESALVYRRAFCSLAFDDRSY 418
>Glyma0022s00450.1
Length = 235
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 9 NGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDK-ANIE 67
G H+RC AHILNL+V++ LKV V +IR +IKYV+ S GRM+ FK CV K I
Sbjct: 98 GGRFFHIRCCAHILNLIVQEGLKVFGPTVNKIRESIKYVKGSEGRMKVFKACVAKVGGIH 157
Query: 68 YKSLVFIDCEMRWNLTYLVLEAALK-HQNAFEELQLHDPKFVDELVR 113
K + +D RWN T+L+LE+AL E L L + DEL+R
Sbjct: 158 TKMGLRLDVITRWNSTFLMLESALLISVWKIECLLLQNLSNKDELIR 204
>Glyma07g11400.1
Length = 325
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 8 LNGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKANIE 67
LNGD H+RC AHILNL+V+D L I + + +R ++KY+ + R++ F V++ +I+
Sbjct: 141 LNGDLFHVRCCAHILNLLVQDGLSKIKDIIQNVRESVKYINHNDSRLKAFCDVVEQKHIK 200
Query: 68 YKSLVFIDCEMRWNLTYLVLEAALKHQNAFEELQLHDPKFV 108
+ L+ IDC RWN T+ +L LK + AF DP +
Sbjct: 201 ERKLI-IDCPTRWNSTFQMLSTILKFKTAFSAYNERDPHYT 240
>Glyma07g13770.1
Length = 272
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 65/111 (58%), Gaps = 6/111 (5%)
Query: 9 NGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDK-ANIE 67
G +RC AHILNL++++ LKV+D + +IR +IKYV+ S GRM+ F CV K I
Sbjct: 109 GGKFFLVRCCAHILNLIIEEGLKVVDPAINKIRESIKYVKGSEGRMKVFNACVAKVGGIH 168
Query: 68 YKSLVFIDCEMRWNLTYLVLEAALKHQN-----AFEELQLHDPKFVDELVR 113
K + +D RWN T+L+LE+AL + E L L + DEL+R
Sbjct: 169 TKMGLRLDVITRWNSTFLMLESALNGREDKKLWKIECLLLQNLSNKDELIR 219
>Glyma15g15880.1
Length = 358
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 9 NGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDK-ANIE 67
G+ H+RC AHILNL+V++ LK +D +IR +IKYV+ S GRM+ FK CV K I
Sbjct: 120 GGEFFHIRCSAHILNLIVQEGLKAVDPTGNKIRESIKYVKGSEGRMKVFKACVAKVGGIH 179
Query: 68 YKSLVFIDCEMRWNLTYLVLE 88
K + +D RWN T+L+LE
Sbjct: 180 TKMDLPLDVITRWNSTFLMLE 200
>Glyma01g26960.1
Length = 203
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 9 NGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDK-ANIE 67
G+ H+RC AHIL L+V++ LKV+ + +IR IKYV+ S GRM+ FK CV K I
Sbjct: 98 GGEFSHIRCCAHILILIVQEGLKVVGPAINKIREIIKYVKGSEGRMKDFKACVAKVGGIH 157
Query: 68 YKSLVFIDCEMRWNLTYLVLEAAL 91
+ +D RWN T+L+LE+AL
Sbjct: 158 TNMGLRLDVITRWNSTFLMLESAL 181
>Glyma15g20070.1
Length = 192
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 57/90 (63%)
Query: 5 VNFLNGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKA 64
N L + LH+R AHILNLVV D LK + +IR A+KYVR S RM +FK + +A
Sbjct: 102 TNPLKEEKLHVRYCAHILNLVVNDGLKEYHSSIRKIRSAVKYVRASPDRMDRFKIFIKEA 161
Query: 65 NIEYKSLVFIDCEMRWNLTYLVLEAALKHQ 94
+ KS++ +D R N TY++LE+ALK Q
Sbjct: 162 KLVEKSIMQLDVSTRLNSTYIMLESALKFQ 191
>Glyma11g33640.1
Length = 321
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 9 NGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKAN-IE 67
GD+ H+RC AHILNL+V++ LKV+ + +IR +IKYV+ S GRM+ K CV K I
Sbjct: 135 GGDYFHIRCVAHILNLIVQEGLKVVGSSIHKIRESIKYVKGSEGRMKALKDCVAKVGAIN 194
Query: 68 YKSLVFIDCEMRWNLTYLVL 87
K + +D RWN ++L L
Sbjct: 195 TKMGLRLDVVTRWNSSFLCL 214
>Glyma11g26100.1
Length = 344
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 8 LNGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKANIE 67
LNGD H+RC +HILNL+V+D L I + + +R ++KY+ + R++ F ++ +++
Sbjct: 98 LNGDLFHVRCCSHILNLLVEDGLDKIKDVIQNVRESVKYINHNDSRLKAFCDVAEQKHLK 157
Query: 68 YKSLVFIDCEMRWNLTYLVLEAALKHQNAFEELQLHDPKFV 108
+ L+ IDC RWN + +L LK + AF DP +
Sbjct: 158 ERKLI-IDCPTRWNSAFQMLSTTLKFKTAFSTYSERDPHYT 197
>Glyma05g20260.1
Length = 429
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 7 FLNGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKANI 66
FL G H+RC HILNL+V+D L I + + I ++KY+ + R++ F V++ +
Sbjct: 193 FLGGSLFHVRCCGHILNLLVQDGLSTIKDIIFNIHESVKYINHNDARLKAFCDVVEQKRL 252
Query: 67 EYKSLVFIDCEMRWNLTYLVLEAALKHQNAF 97
+ + LV IDC RWN T+ +L ALK + AF
Sbjct: 253 KERKLV-IDCPTRWNSTFNMLSTALKFKTAF 282
>Glyma02g34750.1
Length = 439
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 7 FLNGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKANI 66
FL G H+RC A ILNL+V+D L I + + IR ++KY+ ++ R++ F V++ +
Sbjct: 187 FLGGSLFHVRCCARILNLLVQDGLNTIKDIIFNIRESVKYINLNDARLKAFCVVVEQKRL 246
Query: 67 EYKSLVFIDCEMRWNLTYLVLEAALKHQNAFEELQLHDPKF 107
+ LV IDC RWN T+ + LK + AF + +P +
Sbjct: 247 KEMKLV-IDCPTRWNSTFNMFSTTLKFKIAFASYKEKEPHY 286
>Glyma09g15130.2
Length = 672
Score = 72.0 bits (175), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 57/99 (57%)
Query: 13 LHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKANIEYKSLV 72
L +R AH++ + +D + + E + +IR +IKY+R S KF A I ++L+
Sbjct: 298 LDIRSAAHLIKSIAQDAMDALHEVIQKIRESIKYIRSSQVVQGKFNEIAQHARINTQNLL 357
Query: 73 FIDCEMRWNLTYLVLEAALKHQNAFEELQLHDPKFVDEL 111
F+D ++W TYL+LE AL+++ AF Q HDP + L
Sbjct: 358 FLDFPVQWKSTYLMLETALEYRTAFSLFQEHDPSYSSTL 396
>Glyma18g15670.1
Length = 360
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 17 CFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKA-NIEYKSLVFID 75
C AH+LNL+V+D LKV + + +IR +IKYVR S R F C+ + I+ K + +D
Sbjct: 184 CCAHVLNLIVQDGLKVAEVALQKIRDSIKYVRASESRKIIFTECIAQVRGIDTKVGLRLD 243
Query: 76 CEMRWNLTYLVLEAALKHQNAFEELQLHDP 105
RWN TY++LE+AL++ AF L P
Sbjct: 244 VPTRWNSTYVMLESALRYHRAFAIPTLLPP 273
>Glyma04g13970.1
Length = 432
Score = 68.6 bits (166), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Query: 10 GDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDK-ANIEY 68
G+ H+RC A LNL+V++ LKV+ V +I+ +IKYV+ S G+M+ FK CV K I
Sbjct: 228 GEFFHIRCCA--LNLIVQEGLKVVGPAVNKIKESIKYVKGSEGKMKVFKACVAKVGGIRT 285
Query: 69 KSLVFIDCEMRWNLTYLVLEAALKHQNAFEELQLHDPKFVDELVRG 114
K + +D R N T+L+LE+AL ++ AF L D + +L+ G
Sbjct: 286 KMGLRLDVITRCNSTFLMLESALVYRRAFCSLAFDDRSY-SKLISG 330
>Glyma15g29970.1
Length = 268
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 10 GDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDK-ANIEY 68
G+ H+RC AHILNL V++ LKV+ V +IR +IKYV+ S GRM+ FK CV K I
Sbjct: 118 GEFFHIRCCAHILNLNVQEGLKVVGPAVKKIRESIKYVKGSKGRMKVFKACVAKVGGIHT 177
Query: 69 KSLVFIDCEMRWNLT 83
K + I+C + NL+
Sbjct: 178 KMVWKIECLLLQNLS 192
>Glyma03g25710.1
Length = 230
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 38/57 (66%)
Query: 9 NGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKAN 65
G+ H+RC AHILNL+V++ LKV V +IR +IKYV+ GRM+ FK CV K
Sbjct: 159 GGEFFHIRCCAHILNLIVQEGLKVAGLAVNKIRESIKYVKGLEGRMQVFKACVAKVG 215
>Glyma18g38460.1
Length = 267
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 31 KVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDK-ANIEYKSLVFIDCEMRWNLTYLVLEA 89
KV+ + +IR +IK V+ S GRM+ FK CV K I K + +D RWN T+L+LE+
Sbjct: 155 KVVGPSIKKIRESIKNVKGSEGRMKVFKACVAKFGGIHTKMGLHLDVITRWNSTFLMLES 214
Query: 90 ALKHQN-----AFEELQLHDPKFVDELVR 113
AL + E L L + DEL+R
Sbjct: 215 ALNGREDKKLWKIECLLLQNLSNEDELIR 243
>Glyma07g03280.1
Length = 661
Score = 52.8 bits (125), Expect = 7e-08, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 53/107 (49%)
Query: 8 LNGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKANIE 67
LNG L+ C+A +L+ + D L + E + ++R ++K+V+ S RKF +
Sbjct: 290 LNGQLLNQNCYARVLSRLAADALWTMRETICKVRESVKHVKSSESHKRKFIELKQHLQVP 349
Query: 68 YKSLVFIDCEMRWNLTYLVLEAALKHQNAFEELQLHDPKFVDELVRG 114
+ ID + +W+ TY +L AA + + F L DP + L G
Sbjct: 350 SMMDLSIDDQCKWDTTYHMLVAACELKEVFTCLDTIDPDYRMTLTMG 396
>Glyma06g41540.1
Length = 209
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 7 FLNGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKF 57
FL G H+RC AH+LNL+V+D L I + + IR ++KY+ + R++ F
Sbjct: 51 FLGGSLFHVRCCAHMLNLLVQDGLSTIKDIIFNIRESVKYINHNDARLKAF 101
>Glyma10g23870.1
Length = 390
Score = 49.7 bits (117), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 26 VKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKANIEYKSLVFIDCEMRWNLTYL 85
+KD L+V+ E V IR ++ Y + R KF+ + I Y + +DC RWN TY
Sbjct: 231 IKDGLEVVKEGVENIRDSVAYWTATPKRKEKFEETAKQLRIPYNRNLALDCPTRWNSTYK 290
Query: 86 VLEAALKHQN 95
+LE A+ +++
Sbjct: 291 MLEIAIGYED 300
>Glyma15g31510.1
Length = 226
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 9 NGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRM 54
+G+H H+RC AHILNL+V++ LKV D + +IR +I + +S G +
Sbjct: 124 DGEHFHVRCCAHILNLIVQEGLKVADHALEKIRDSICHTLISSGDL 169
>Glyma11g17510.1
Length = 348
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 40 IRVAIKYVRVSYGRMRKFKTCVDKA-NIEYKSLVFIDCEMRWNLTYLVLEAALKHQNAFE 98
I+ +IKYVR S R F C+ + I+ K + +D WN TY++LE+AL++ AF
Sbjct: 139 IKNSIKYVRASESRKIVFTECIAQVRGIDTKVGLRLDVPTWWNSTYIMLESALRYLRAFA 198
Query: 99 ELQLHDPKF 107
+ D K+
Sbjct: 199 SFTIRDRKY 207