Miyakogusa Predicted Gene

Lj0g3v0227459.3
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0227459.3 Non Chatacterized Hit- tr|I1H9E8|I1H9E8_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,49.48,5e-19,Ribonuclease H-like,Ribonuclease H-like domain;
SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL,CUFF.14833.3
         (121 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g10320.1                                                        91   3e-19
Glyma19g24990.1                                                        86   7e-18
Glyma04g34950.1                                                        83   9e-17
Glyma0022s00450.1                                                      81   3e-16
Glyma07g11400.1                                                        80   5e-16
Glyma07g13770.1                                                        79   2e-15
Glyma15g15880.1                                                        77   3e-15
Glyma01g26960.1                                                        75   2e-14
Glyma15g20070.1                                                        75   2e-14
Glyma11g33640.1                                                        74   3e-14
Glyma11g26100.1                                                        74   3e-14
Glyma05g20260.1                                                        74   4e-14
Glyma02g34750.1                                                        73   6e-14
Glyma09g15130.2                                                        72   1e-13
Glyma18g15670.1                                                        70   4e-13
Glyma04g13970.1                                                        69   2e-12
Glyma15g29970.1                                                        67   4e-12
Glyma03g25710.1                                                        60   6e-10
Glyma18g38460.1                                                        53   7e-08
Glyma07g03280.1                                                        53   7e-08
Glyma06g41540.1                                                        50   5e-07
Glyma10g23870.1                                                        50   7e-07
Glyma15g31510.1                                                        49   1e-06
Glyma11g17510.1                                                        46   9e-06

>Glyma08g10320.1 
          Length = 736

 Score = 90.9 bits (224), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/105 (42%), Positives = 61/105 (58%)

Query: 7   FLNGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKANI 66
            LNG+H+H+RC  HILN +V D L+ +D  + RIR A KYVR    R   FK C + ANI
Sbjct: 301 LLNGEHVHLRCCTHILNSIVSDGLQEMDCCIARIRAACKYVRSFSSRYACFKRCANLANI 360

Query: 67  EYKSLVFIDCEMRWNLTYLVLEAALKHQNAFEELQLHDPKFVDEL 111
               ++ +D   +WN TYL+L  A K + AF  L+  D  +V  L
Sbjct: 361 NCDQMIVLDEPTKWNSTYLMLVVAEKFEKAFNLLEFEDDSYVKSL 405


>Glyma19g24990.1 
          Length = 443

 Score = 86.3 bits (212), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 54/83 (65%)

Query: 7   FLNGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKANI 66
            LNG  +HMRCFAHILNL+V D LK ID  + +IR   K+V+ S  R   FK C ++ N+
Sbjct: 191 LLNGGFMHMRCFAHILNLIVNDGLKEIDLSIRKIRFICKFVKSSPRRFASFKRCDEEVNV 250

Query: 67  EYKSLVFIDCEMRWNLTYLVLEA 89
             K+++ +D   RWN TYL+L+ 
Sbjct: 251 STKAMLILDVPTRWNSTYLMLDG 273


>Glyma04g34950.1 
          Length = 680

 Score = 82.8 bits (203), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 45/99 (45%), Positives = 63/99 (63%), Gaps = 1/99 (1%)

Query: 10  GDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDK-ANIEY 68
           G+  H++C AHILNL+V++ LKV    V +IR +IKYV+ S GRM+ FK CV K   I  
Sbjct: 320 GEFFHIQCCAHILNLIVQEGLKVAGPSVNKIRESIKYVKGSEGRMQVFKACVAKVGGIHT 379

Query: 69  KSLVFIDCEMRWNLTYLVLEAALKHQNAFEELQLHDPKF 107
           K  + +D   RWN T+L+LE+AL ++ AF  L   D  +
Sbjct: 380 KMGLRLDVITRWNSTFLMLESALVYRRAFCSLAFDDRSY 418


>Glyma0022s00450.1 
          Length = 235

 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 64/107 (59%), Gaps = 2/107 (1%)

Query: 9   NGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDK-ANIE 67
            G   H+RC AHILNL+V++ LKV    V +IR +IKYV+ S GRM+ FK CV K   I 
Sbjct: 98  GGRFFHIRCCAHILNLIVQEGLKVFGPTVNKIRESIKYVKGSEGRMKVFKACVAKVGGIH 157

Query: 68  YKSLVFIDCEMRWNLTYLVLEAALK-HQNAFEELQLHDPKFVDELVR 113
            K  + +D   RWN T+L+LE+AL       E L L +    DEL+R
Sbjct: 158 TKMGLRLDVITRWNSTFLMLESALLISVWKIECLLLQNLSNKDELIR 204


>Glyma07g11400.1 
          Length = 325

 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 61/101 (60%), Gaps = 1/101 (0%)

Query: 8   LNGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKANIE 67
           LNGD  H+RC AHILNL+V+D L  I + +  +R ++KY+  +  R++ F   V++ +I+
Sbjct: 141 LNGDLFHVRCCAHILNLLVQDGLSKIKDIIQNVRESVKYINHNDSRLKAFCDVVEQKHIK 200

Query: 68  YKSLVFIDCEMRWNLTYLVLEAALKHQNAFEELQLHDPKFV 108
            + L+ IDC  RWN T+ +L   LK + AF      DP + 
Sbjct: 201 ERKLI-IDCPTRWNSTFQMLSTILKFKTAFSAYNERDPHYT 240


>Glyma07g13770.1 
          Length = 272

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 65/111 (58%), Gaps = 6/111 (5%)

Query: 9   NGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDK-ANIE 67
            G    +RC AHILNL++++ LKV+D  + +IR +IKYV+ S GRM+ F  CV K   I 
Sbjct: 109 GGKFFLVRCCAHILNLIIEEGLKVVDPAINKIRESIKYVKGSEGRMKVFNACVAKVGGIH 168

Query: 68  YKSLVFIDCEMRWNLTYLVLEAALKHQN-----AFEELQLHDPKFVDELVR 113
            K  + +D   RWN T+L+LE+AL  +        E L L +    DEL+R
Sbjct: 169 TKMGLRLDVITRWNSTFLMLESALNGREDKKLWKIECLLLQNLSNKDELIR 219


>Glyma15g15880.1 
          Length = 358

 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 1/81 (1%)

Query: 9   NGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDK-ANIE 67
            G+  H+RC AHILNL+V++ LK +D    +IR +IKYV+ S GRM+ FK CV K   I 
Sbjct: 120 GGEFFHIRCSAHILNLIVQEGLKAVDPTGNKIRESIKYVKGSEGRMKVFKACVAKVGGIH 179

Query: 68  YKSLVFIDCEMRWNLTYLVLE 88
            K  + +D   RWN T+L+LE
Sbjct: 180 TKMDLPLDVITRWNSTFLMLE 200


>Glyma01g26960.1 
          Length = 203

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 1/84 (1%)

Query: 9   NGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDK-ANIE 67
            G+  H+RC AHIL L+V++ LKV+   + +IR  IKYV+ S GRM+ FK CV K   I 
Sbjct: 98  GGEFSHIRCCAHILILIVQEGLKVVGPAINKIREIIKYVKGSEGRMKDFKACVAKVGGIH 157

Query: 68  YKSLVFIDCEMRWNLTYLVLEAAL 91
               + +D   RWN T+L+LE+AL
Sbjct: 158 TNMGLRLDVITRWNSTFLMLESAL 181


>Glyma15g20070.1 
          Length = 192

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 57/90 (63%)

Query: 5   VNFLNGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKA 64
            N L  + LH+R  AHILNLVV D LK     + +IR A+KYVR S  RM +FK  + +A
Sbjct: 102 TNPLKEEKLHVRYCAHILNLVVNDGLKEYHSSIRKIRSAVKYVRASPDRMDRFKIFIKEA 161

Query: 65  NIEYKSLVFIDCEMRWNLTYLVLEAALKHQ 94
            +  KS++ +D   R N TY++LE+ALK Q
Sbjct: 162 KLVEKSIMQLDVSTRLNSTYIMLESALKFQ 191


>Glyma11g33640.1 
          Length = 321

 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)

Query: 9   NGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKAN-IE 67
            GD+ H+RC AHILNL+V++ LKV+   + +IR +IKYV+ S GRM+  K CV K   I 
Sbjct: 135 GGDYFHIRCVAHILNLIVQEGLKVVGSSIHKIRESIKYVKGSEGRMKALKDCVAKVGAIN 194

Query: 68  YKSLVFIDCEMRWNLTYLVL 87
            K  + +D   RWN ++L L
Sbjct: 195 TKMGLRLDVVTRWNSSFLCL 214


>Glyma11g26100.1 
          Length = 344

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 1/101 (0%)

Query: 8   LNGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKANIE 67
           LNGD  H+RC +HILNL+V+D L  I + +  +R ++KY+  +  R++ F    ++ +++
Sbjct: 98  LNGDLFHVRCCSHILNLLVEDGLDKIKDVIQNVRESVKYINHNDSRLKAFCDVAEQKHLK 157

Query: 68  YKSLVFIDCEMRWNLTYLVLEAALKHQNAFEELQLHDPKFV 108
            + L+ IDC  RWN  + +L   LK + AF      DP + 
Sbjct: 158 ERKLI-IDCPTRWNSAFQMLSTTLKFKTAFSTYSERDPHYT 197


>Glyma05g20260.1 
          Length = 429

 Score = 73.6 bits (179), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 7   FLNGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKANI 66
           FL G   H+RC  HILNL+V+D L  I + +  I  ++KY+  +  R++ F   V++  +
Sbjct: 193 FLGGSLFHVRCCGHILNLLVQDGLSTIKDIIFNIHESVKYINHNDARLKAFCDVVEQKRL 252

Query: 67  EYKSLVFIDCEMRWNLTYLVLEAALKHQNAF 97
           + + LV IDC  RWN T+ +L  ALK + AF
Sbjct: 253 KERKLV-IDCPTRWNSTFNMLSTALKFKTAF 282


>Glyma02g34750.1 
          Length = 439

 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 1/101 (0%)

Query: 7   FLNGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKANI 66
           FL G   H+RC A ILNL+V+D L  I + +  IR ++KY+ ++  R++ F   V++  +
Sbjct: 187 FLGGSLFHVRCCARILNLLVQDGLNTIKDIIFNIRESVKYINLNDARLKAFCVVVEQKRL 246

Query: 67  EYKSLVFIDCEMRWNLTYLVLEAALKHQNAFEELQLHDPKF 107
           +   LV IDC  RWN T+ +    LK + AF   +  +P +
Sbjct: 247 KEMKLV-IDCPTRWNSTFNMFSTTLKFKIAFASYKEKEPHY 286


>Glyma09g15130.2 
          Length = 672

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/99 (35%), Positives = 57/99 (57%)

Query: 13  LHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKANIEYKSLV 72
           L +R  AH++  + +D +  + E + +IR +IKY+R S     KF      A I  ++L+
Sbjct: 298 LDIRSAAHLIKSIAQDAMDALHEVIQKIRESIKYIRSSQVVQGKFNEIAQHARINTQNLL 357

Query: 73  FIDCEMRWNLTYLVLEAALKHQNAFEELQLHDPKFVDEL 111
           F+D  ++W  TYL+LE AL+++ AF   Q HDP +   L
Sbjct: 358 FLDFPVQWKSTYLMLETALEYRTAFSLFQEHDPSYSSTL 396


>Glyma18g15670.1 
          Length = 360

 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 17  CFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKA-NIEYKSLVFID 75
           C AH+LNL+V+D LKV +  + +IR +IKYVR S  R   F  C+ +   I+ K  + +D
Sbjct: 184 CCAHVLNLIVQDGLKVAEVALQKIRDSIKYVRASESRKIIFTECIAQVRGIDTKVGLRLD 243

Query: 76  CEMRWNLTYLVLEAALKHQNAFEELQLHDP 105
              RWN TY++LE+AL++  AF    L  P
Sbjct: 244 VPTRWNSTYVMLESALRYHRAFAIPTLLPP 273


>Glyma04g13970.1 
          Length = 432

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 4/106 (3%)

Query: 10  GDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDK-ANIEY 68
           G+  H+RC A  LNL+V++ LKV+   V +I+ +IKYV+ S G+M+ FK CV K   I  
Sbjct: 228 GEFFHIRCCA--LNLIVQEGLKVVGPAVNKIKESIKYVKGSEGKMKVFKACVAKVGGIRT 285

Query: 69  KSLVFIDCEMRWNLTYLVLEAALKHQNAFEELQLHDPKFVDELVRG 114
           K  + +D   R N T+L+LE+AL ++ AF  L   D  +  +L+ G
Sbjct: 286 KMGLRLDVITRCNSTFLMLESALVYRRAFCSLAFDDRSY-SKLISG 330


>Glyma15g29970.1 
          Length = 268

 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 10  GDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDK-ANIEY 68
           G+  H+RC AHILNL V++ LKV+   V +IR +IKYV+ S GRM+ FK CV K   I  
Sbjct: 118 GEFFHIRCCAHILNLNVQEGLKVVGPAVKKIRESIKYVKGSKGRMKVFKACVAKVGGIHT 177

Query: 69  KSLVFIDCEMRWNLT 83
           K +  I+C +  NL+
Sbjct: 178 KMVWKIECLLLQNLS 192


>Glyma03g25710.1 
          Length = 230

 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 38/57 (66%)

Query: 9   NGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKAN 65
            G+  H+RC AHILNL+V++ LKV    V +IR +IKYV+   GRM+ FK CV K  
Sbjct: 159 GGEFFHIRCCAHILNLIVQEGLKVAGLAVNKIRESIKYVKGLEGRMQVFKACVAKVG 215


>Glyma18g38460.1 
          Length = 267

 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 6/89 (6%)

Query: 31  KVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDK-ANIEYKSLVFIDCEMRWNLTYLVLEA 89
           KV+   + +IR +IK V+ S GRM+ FK CV K   I  K  + +D   RWN T+L+LE+
Sbjct: 155 KVVGPSIKKIRESIKNVKGSEGRMKVFKACVAKFGGIHTKMGLHLDVITRWNSTFLMLES 214

Query: 90  ALKHQN-----AFEELQLHDPKFVDELVR 113
           AL  +        E L L +    DEL+R
Sbjct: 215 ALNGREDKKLWKIECLLLQNLSNEDELIR 243


>Glyma07g03280.1 
          Length = 661

 Score = 52.8 bits (125), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 53/107 (49%)

Query: 8   LNGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKANIE 67
           LNG  L+  C+A +L+ +  D L  + E + ++R ++K+V+ S    RKF        + 
Sbjct: 290 LNGQLLNQNCYARVLSRLAADALWTMRETICKVRESVKHVKSSESHKRKFIELKQHLQVP 349

Query: 68  YKSLVFIDCEMRWNLTYLVLEAALKHQNAFEELQLHDPKFVDELVRG 114
               + ID + +W+ TY +L AA + +  F  L   DP +   L  G
Sbjct: 350 SMMDLSIDDQCKWDTTYHMLVAACELKEVFTCLDTIDPDYRMTLTMG 396


>Glyma06g41540.1 
          Length = 209

 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 33/51 (64%)

Query: 7   FLNGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKF 57
           FL G   H+RC AH+LNL+V+D L  I + +  IR ++KY+  +  R++ F
Sbjct: 51  FLGGSLFHVRCCAHMLNLLVQDGLSTIKDIIFNIRESVKYINHNDARLKAF 101


>Glyma10g23870.1 
          Length = 390

 Score = 49.7 bits (117), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 39/70 (55%)

Query: 26  VKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKTCVDKANIEYKSLVFIDCEMRWNLTYL 85
           +KD L+V+ E V  IR ++ Y   +  R  KF+    +  I Y   + +DC  RWN TY 
Sbjct: 231 IKDGLEVVKEGVENIRDSVAYWTATPKRKEKFEETAKQLRIPYNRNLALDCPTRWNSTYK 290

Query: 86  VLEAALKHQN 95
           +LE A+ +++
Sbjct: 291 MLEIAIGYED 300


>Glyma15g31510.1 
          Length = 226

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 33/46 (71%)

Query: 9   NGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRM 54
           +G+H H+RC AHILNL+V++ LKV D  + +IR +I +  +S G +
Sbjct: 124 DGEHFHVRCCAHILNLIVQEGLKVADHALEKIRDSICHTLISSGDL 169


>Glyma11g17510.1 
          Length = 348

 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 40  IRVAIKYVRVSYGRMRKFKTCVDKA-NIEYKSLVFIDCEMRWNLTYLVLEAALKHQNAFE 98
           I+ +IKYVR S  R   F  C+ +   I+ K  + +D    WN TY++LE+AL++  AF 
Sbjct: 139 IKNSIKYVRASESRKIVFTECIAQVRGIDTKVGLRLDVPTWWNSTYIMLESALRYLRAFA 198

Query: 99  ELQLHDPKF 107
              + D K+
Sbjct: 199 SFTIRDRKY 207