Miyakogusa Predicted Gene

Lj0g3v0215509.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0215509.1 Non Chatacterized Hit- tr|A5APC0|A5APC0_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,96.25,5.00264e-43,LSM,Ribonucleoprotein LSM domain; no
description,NULL; Sm-like ribonucleoproteins,Like-Sm (LSM)
doma,CUFF.13894.1
         (81 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g39780.1                                                       175   1e-44
Glyma03g37170.1                                                       175   1e-44
Glyma02g17430.1                                                       175   1e-44
Glyma10g02380.1                                                       174   1e-44
Glyma02g17430.2                                                       174   2e-44
Glyma03g37170.2                                                       174   2e-44
Glyma03g37170.3                                                       173   4e-44
Glyma05g31950.2                                                        59   1e-09
Glyma08g15260.1                                                        58   2e-09
Glyma05g31950.1                                                        58   2e-09
Glyma19g33600.1                                                        48   2e-06
Glyma03g30750.1                                                        48   2e-06

>Glyma19g39780.1 
          Length = 148

 Score =  175 bits (443), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 80/81 (98%), Positives = 81/81 (100%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECY 60
          MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICT+KDGDRFWRMPECY
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61 IRGNTIKYLRVPDEVIDKVQE 81
          IRGNTIKYLRVPDEVIDKVQE
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQE 81


>Glyma03g37170.1 
          Length = 148

 Score =  175 bits (443), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 80/81 (98%), Positives = 81/81 (100%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECY 60
          MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICT+KDGDRFWRMPECY
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61 IRGNTIKYLRVPDEVIDKVQE 81
          IRGNTIKYLRVPDEVIDKVQE
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQE 81


>Glyma02g17430.1 
          Length = 149

 Score =  175 bits (443), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 80/81 (98%), Positives = 81/81 (100%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECY 60
          MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICT+KDGDRFWRMPECY
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61 IRGNTIKYLRVPDEVIDKVQE 81
          IRGNTIKYLRVPDEVIDKVQE
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQE 81


>Glyma10g02380.1 
          Length = 149

 Score =  174 bits (442), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 80/81 (98%), Positives = 81/81 (100%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECY 60
          MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICT+KDGDRFWRMPECY
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61 IRGNTIKYLRVPDEVIDKVQE 81
          IRGNTIKYLRVPDEVIDKVQE
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQE 81


>Glyma02g17430.2 
          Length = 147

 Score =  174 bits (442), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 80/81 (98%), Positives = 81/81 (100%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECY 60
          MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICT+KDGDRFWRMPECY
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61 IRGNTIKYLRVPDEVIDKVQE 81
          IRGNTIKYLRVPDEVIDKVQE
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQE 81


>Glyma03g37170.2 
          Length = 144

 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 80/81 (98%), Positives = 81/81 (100%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECY 60
          MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICT+KDGDRFWRMPECY
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61 IRGNTIKYLRVPDEVIDKVQE 81
          IRGNTIKYLRVPDEVIDKVQE
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQE 81


>Glyma03g37170.3 
          Length = 128

 Score =  173 bits (438), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 80/81 (98%), Positives = 81/81 (100%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECY 60
          MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICT+KDGDRFWRMPECY
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61 IRGNTIKYLRVPDEVIDKVQE 81
          IRGNTIKYLRVPDEVIDKVQE
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQE 81


>Glyma05g31950.2 
          Length = 117

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 2  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECYI 61
          +P+ LL  A GH + VELK+GE Y G ++ C+   N  L  +  T KDG +  ++   +I
Sbjct: 7  IPVKLLHEASGHVVTVELKSGELYRGSMIECEDNWNCQLESITYTAKDG-KTSQLEHVFI 65

Query: 62 RGNTIKYLRVPD 73
          RG+ ++++ +PD
Sbjct: 66 RGSKVRFMVIPD 77


>Glyma08g15260.1 
          Length = 131

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 2  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECYI 61
          +P+ LL  A GH + VELK+GE Y G ++ C+   N  L  +  T KDG +  ++   +I
Sbjct: 7  IPVKLLHEASGHVVTVELKSGELYRGSMIECEDNWNCQLESITYTAKDG-KTSQLEHVFI 65

Query: 62 RGNTIKYLRVPD 73
          RG+ ++++ +PD
Sbjct: 66 RGSKVRFMVIPD 77


>Glyma05g31950.1 
          Length = 131

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 2  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECYI 61
          +P+ LL  A GH + VELK+GE Y G ++ C+   N  L  +  T KDG +  ++   +I
Sbjct: 7  IPVKLLHEASGHVVTVELKSGELYRGSMIECEDNWNCQLESITYTAKDG-KTSQLEHVFI 65

Query: 62 RGNTIKYLRVPD 73
          RG+ ++++ +PD
Sbjct: 66 RGSKVRFMVIPD 77


>Glyma19g33600.1 
          Length = 93

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDG-DRFWRMPEC 59
          ML  S  K   G  ++VELKN     G L + D ++NI L      N++       +  C
Sbjct: 1  MLFFSYFKDLVGREVIVELKNDLAIKGTLHSVDQYLNIKLENTSVVNQEKYPHMLSVRNC 60

Query: 60 YIRGNTIKYLRVPDEVID 77
          +IRG+ ++Y+++P E +D
Sbjct: 61 FIRGSVVRYVQLPPEGVD 78


>Glyma03g30750.1 
          Length = 93

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDG-DRFWRMPEC 59
          ML  S  K   G  ++VELKN     G L + D ++NI L      N++       +  C
Sbjct: 1  MLFFSYFKDLVGREVIVELKNDLAIKGTLHSVDQYLNIKLENTSVVNQEKYPHMLSVRNC 60

Query: 60 YIRGNTIKYLRVPDEVID 77
          +IRG+ ++Y+++P E +D
Sbjct: 61 FIRGSVVRYVQLPPEGVD 78