Miyakogusa Predicted Gene

Lj0g3v0203109.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0203109.1 Non Chatacterized Hit- tr|I1NFK6|I1NFK6_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,44.83,1e-17,seg,NULL,CUFF.12936.1
         (142 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g41930.1                                                        92   1e-19
Glyma20g25110.1                                                        85   3e-17

>Glyma10g41930.1 
          Length = 282

 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 68/112 (60%), Gaps = 28/112 (25%)

Query: 33  QREFI-DAASHLSTVXXXXXXXXXXXXXXXXLQEISQSPICAPNVFESNGYSYPNQESSY 91
           QREFI D A+H +T+                            NVFE+N  SYP Q++ Y
Sbjct: 197 QREFIMDDANHFNTI--------------------------PSNVFENNVCSYPIQDNCY 230

Query: 92  VDNNSYGLEGLNLDPLPTMENYDISQFDFQSVGSGWMLENMAEA-LWNMDAM 142
           VD N+YG+EG+N+DPL  M+ YD  QFDFQ+ G+GWML++M ++ LWNM+AM
Sbjct: 231 VDTNNYGMEGINMDPLSAMDTYDFPQFDFQTAGNGWMLDSMGDSTLWNMEAM 282


>Glyma20g25110.1 
          Length = 257

 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 50/60 (83%), Gaps = 1/60 (1%)

Query: 84  YPNQESSYVDNNSYGLEGLNLDPLPTMENYDISQFDFQSVGSGWMLENMAEA-LWNMDAM 142
           YP Q++ Y+D N+YG+EG+N+DPL  M+ YD SQFDFQ+ G+GWML++M ++ LWNMDAM
Sbjct: 198 YPIQDNCYLDTNNYGMEGINMDPLSAMDTYDFSQFDFQTAGNGWMLDSMGDSTLWNMDAM 257