Miyakogusa Predicted Gene

Ljmitog3v0000190.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Ljmitog3v0000190.1 Non Characterized Hit- tr|I1KZN7|I1KZN7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.39997
PE,93.61,0,ATPASEA,ATPase, F0 complex, subunit A;
ATP_synth_a_bact,ATPase, F0 complex, subunit A; F1F0 ATP
synt,CUFF.17.1
         (329 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0082s0160.1 | cytochrome C oxidase subunit 3 | HC | scaffol...    80   2e-15
Medtr0248s0030.1 | ATP synthase subunit A | LC | scaffold0248:17...    64   1e-10

>Medtr0082s0160.1 | cytochrome C oxidase subunit 3 | HC |
           scaffold0082:37863-36799 | 20130731
          Length = 324

 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 41/46 (89%), Gaps = 3/46 (6%)

Query: 119 GKSVPNAWQSSVELIYDFVPNLVNEQIGGLSGNVKQKFFPCISVTF 164
           GKSVPNAWQS VELIYDFV NLVNEQIG   GNVKQ+FFPCISVT+
Sbjct: 281 GKSVPNAWQSLVELIYDFVLNLVNEQIG---GNVKQEFFPCISVTY 323


>Medtr0248s0030.1 | ATP synthase subunit A | LC |
           scaffold0248:17522-18828 | 20130731
          Length = 109

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/31 (96%), Positives = 31/31 (100%)

Query: 173 QGMIPYSFTVTSHFLITLGLSFSIFIGITIV 203
           +GMIPYSFTVTSHFLITLGLSFSIFIGITIV
Sbjct: 46  KGMIPYSFTVTSHFLITLGLSFSIFIGITIV 76