Miyakogusa Predicted Gene

Lj6g3v2274810.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2274810.1 Non Characterized Hit- tr|I1LTE9|I1LTE9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56950
PE,92.13,0,CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR,NULL;
seg,NULL; coiled-coil,NULL; no
description,NUL,NODE_37852_length_1272_cov_130.597488.path2.1
         (306 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g006180.1 | cleavage and polyadenylation specificity facto...   555   e-158
Medtr2g015350.1 | hypothetical protein | LC | chr2:4534097-45344...    62   5e-10

>Medtr2g006180.1 | cleavage and polyadenylation specificity factor |
           HC | chr2:489334-485307 | 20130731
          Length = 690

 Score =  555 bits (1429), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 270/305 (88%), Positives = 284/305 (93%)

Query: 1   MNGLTAPLNMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGEANEMGRLKQKLMTQFA 60
           MNGL+APL+MQVHYISFSAHADSAQTSAFLEELNPPNIILVHG ANEMGRLKQKLMTQFA
Sbjct: 385 MNGLSAPLHMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGAANEMGRLKQKLMTQFA 444

Query: 61  DRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFTYQIMAPDD 120
           DRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFTYQIMAPDD
Sbjct: 445 DRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFTYQIMAPDD 504

Query: 121 LHVFSQLSTANVTQRITIPHSGAFSIIQHRLKQIYESVEPSVDEESGVPTLLVHERVTVK 180
           LHVFSQLSTANVTQRITIP+SGAF +IQ RLKQIYESVEPSVDEESGVP LLVH+RVTVK
Sbjct: 505 LHVFSQLSTANVTQRITIPYSGAFCVIQSRLKQIYESVEPSVDEESGVPMLLVHDRVTVK 564

Query: 181 HESEKHISLHWPSDPISDMVSDSVVALILNMNRDVPKIMDEADAIXXXXXXXXXXXXVMH 240
           HESEKH+SLHW SDPI+DMVSDSVVAL+LN+NRD+PKI+ E+DA             VM 
Sbjct: 565 HESEKHVSLHWASDPINDMVSDSVVALVLNINRDLPKIVAESDATKIEEENEKKTEKVMQ 624

Query: 241 ALLVSLFGDVKVGENGKLIINIDGNVAELNKESGEVESENEGLKERVKTAFRRIQSSVKP 300
           ALL SLFG+VKVGENGKLIINIDGNVAELNKESGEVESENEGLKERV+TAFRRIQSSVKP
Sbjct: 625 ALLNSLFGNVKVGENGKLIINIDGNVAELNKESGEVESENEGLKERVRTAFRRIQSSVKP 684

Query: 301 IPLSA 305
           IPLSA
Sbjct: 685 IPLSA 689


>Medtr2g015350.1 | hypothetical protein | LC | chr2:4534097-4534462
           | 20130731
          Length = 121

 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 199 MVSDSVVALILNMNRDVPKI-MDEADAIXXXXXXXXXXXXVMHALLVSLFGDVKVGENGK 257
           MVSDSVVAL++++NRD+PKI + +   +            ++ AL  SLF DV+V ENGK
Sbjct: 1   MVSDSVVALVISINRDLPKIWLYQTLLLTKKKRSQRSRLCILLALFNSLFVDVQVEENGK 60

Query: 258 LIINIDGNVAELNK 271
           LIINI GN A   K
Sbjct: 61  LIINIVGNEAGFKK 74