Miyakogusa Predicted Gene

Lj6g3v2007310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2007310.1 tr|B9N3I1|B9N3I1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_784298 PE=4
SV=1,31.38,0.000000007, ,CUFF.60509.1
         (189 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g014250.1 | hypothetical protein | HC | chr2:3995651-39962...   214   4e-56
Medtr4g088510.1 | hypothetical protein | HC | chr4:35129670-3512...   112   3e-25

>Medtr2g014250.1 | hypothetical protein | HC | chr2:3995651-3996265
           | 20130731
          Length = 204

 Score =  214 bits (545), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 122/191 (63%), Positives = 138/191 (72%), Gaps = 4/191 (2%)

Query: 1   MDTRQANKLTSHVAADNISMDSLSFSDLVCVQDQQPKFPSS-NHAKRYQVSKHSSEFEFT 59
           MDT++ NK  S V  D++SMDSLSFS  V +QDQQ  FPS  N AK +QVSK   +FEFT
Sbjct: 16  MDTKKGNKPPSKVVTDSLSMDSLSFSGYVSIQDQQQNFPSPPNQAKHFQVSKLDLDFEFT 75

Query: 60  TTKPNLNSAVNRIKITSADQLISNGQLQPQALPFQTT-QCVIINRPSSLSPLQATHISGK 118
             K NLNSAVN IKIT ADQLISNGQLQP+A  FQTT Q VIIN  SS   L ATHIS +
Sbjct: 76  NPKANLNSAVNPIKITPADQLISNGQLQPKAFAFQTTPQSVIINPTSSSRSLLATHISSE 135

Query: 119 MPSGQTITATKYHEKLSKSSKHTTTNKQTTVARTGFRQKMKSFLSPCRECQTIKHDAVKA 178
           M SG+  +  KYHE L K+SKH  TNKQ+TV R GF QK+KSFLSPCREC+ +K  AVKA
Sbjct: 136 MSSGKKGSTVKYHE-LGKASKH-ATNKQSTVKRKGFGQKVKSFLSPCRECKIVKPCAVKA 193

Query: 179 QTVPGEKIKIY 189
           QTV  E  KIY
Sbjct: 194 QTVQRENFKIY 204


>Medtr4g088510.1 | hypothetical protein | HC |
           chr4:35129670-35128731 | 20130731
          Length = 177

 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/189 (43%), Positives = 102/189 (53%), Gaps = 17/189 (8%)

Query: 1   MDTRQANKLTSHVAADNISMDSLSFSDLVCVQDQQPKFPSSNHAKRYQVSKHSSEFEFTT 60
           M T Q NK     A D+IS DS SF+ LV + DQQ      NH       K   +FEF T
Sbjct: 1   MGTLQKNKDNYDAARDSISADSFSFAGLVSIHDQQ----QQNHPVAPN-PKPDPDFEFAT 55

Query: 61  TKPNLNS-AVNRIKITSADQLISNGQLQPQALPFQTTQCVIIN-RPSSLSPLQATHISGK 118
            K NL S + N  KIT AD LISNGQ++P A+ FQ  +    N + SSL  L    I   
Sbjct: 56  IKANLYSTSTNPFKITPADMLISNGQIKPHAISFQPNRSFFTNPQVSSLRSLLEIDIE-- 113

Query: 119 MPSGQTIT-ATKYHEKLSKSSKHTTTNKQTTVARTGFRQKM-KSFLSPCRECQTIKHDAV 176
               QT + A KYHE+L K+      NK  TV +T F QKM +SF+SPCR+C+  +  AV
Sbjct: 114 ----QTSSRARKYHEQLVKA--RNLKNKGKTVTKTWFGQKMFRSFVSPCRKCEAEQPGAV 167

Query: 177 KAQTVPGEK 185
             QT P E+
Sbjct: 168 NGQTAPQER 176