Miyakogusa Predicted Gene

Lj6g3v2006410.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2006410.3 tr|Q0E463|Q0E463_ORYSJ Os02g0134300 protein
OS=Oryza sativa subsp. japonica GN=Os02g0134300 PE=4
SV=,80.28,2e-18,seg,NULL; Zinc beta-ribbon,NULL; Elf1,Transcription
elongation factor 1; SUBFAMILY NOT NAMED,NULL; U,CUFF.60462.3
         (72 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g088115.1 | transcription elongation factor-like protein |...   118   1e-27

>Medtr4g088115.1 | transcription elongation factor-like protein |
          HC | chr4:34718552-34720969 | 20130731
          Length = 88

 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/72 (80%), Positives = 58/72 (80%)

Query: 1  MGXXXXXXXXXXXXXMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCGICQESFSTNI 60
          MG             MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCGICQESFST I
Sbjct: 1  MGKRKAKTKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCGICQESFSTTI 60

Query: 61 TALSEAIDIYSE 72
          TALSEAIDIYSE
Sbjct: 61 TALSEAIDIYSE 72