Miyakogusa Predicted Gene

Lj6g3v1764530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1764530.1 Non Characterized Hit- tr|O49642|O49642_ARATH
Putative uncharacterized protein AT4g22370 OS=Arabidop,49.44,1e-18,no
description,NULL,CUFF.59909.1
         (213 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g025760.1 | transmembrane protein, putative | HC | chr2:92...   302   2e-82
Medtr2g025760.3 | transmembrane protein, putative | HC | chr2:92...   295   2e-80
Medtr2g025760.2 | transmembrane protein, putative | HC | chr2:92...   290   7e-79
Medtr5g010050.1 | SnoaL-like domain protein | HC | chr5:2613254-...    66   3e-11
Medtr7g018880.1 | nuclear transport factor 2 (NTF2) family prote...    58   6e-09
Medtr3g090440.1 | SnoaL-like domain protein | HC | chr3:41079404...    49   3e-06

>Medtr2g025760.1 | transmembrane protein, putative | HC |
           chr2:9223397-9221517 | 20130731
          Length = 251

 Score =  302 bits (773), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 149/203 (73%), Positives = 166/203 (81%), Gaps = 7/203 (3%)

Query: 16  ISLSPLSFSNITYNSC--NVSLPRNVH----VQGNFLSSISHQSSAHRNLTSDRQRGLSL 69
           +S S L FS IT N+C   +SLPR +H    +  N +SS S Q+S H NL   +QRGLS 
Sbjct: 1   MSFSALPFS-ITNNNCCKYISLPRKLHRNVDIHYNSISSFSCQTSIHENLYPRKQRGLSF 59

Query: 70  IAFDGNKNSEPVGEDDNQALDAVMKLYSAFKNKNTNELSEILADECSCVCNFLSFFQTFQ 129
           IAFD  KNSEPVGED++QALDAVMKLYSAFKNKN  ELSEILADEC CVCNFLSFFQ FQ
Sbjct: 60  IAFDSKKNSEPVGEDNDQALDAVMKLYSAFKNKNIQELSEILADECRCVCNFLSFFQAFQ 119

Query: 130 GKTQVLEFFSSLISMLGDNIQIVVKPTLHDGMNVGVQWKFEWNKIHFPLGKGFSFHICQS 189
           GKTQVLEFFS LI + GDNIQIVVKPTLHDGMNVGV WKFEWN IH PLGKGFSFHICQ+
Sbjct: 120 GKTQVLEFFSHLIRLFGDNIQIVVKPTLHDGMNVGVHWKFEWNTIHIPLGKGFSFHICQT 179

Query: 190 YQGKAVIRNIEMVMEPLLYLKPF 212
           Y+GKAVI+NI+M MEPLL+L+PF
Sbjct: 180 YRGKAVIKNIDMFMEPLLFLEPF 202


>Medtr2g025760.3 | transmembrane protein, putative | HC |
           chr2:9223437-9221355 | 20130731
          Length = 209

 Score =  295 bits (754), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 150/207 (72%), Positives = 166/207 (80%), Gaps = 8/207 (3%)

Query: 1   MSTFSIQGPIKCN-RTISLSPLSFSNITYNSC--NVSLPRNVH----VQGNFLSSISHQS 53
           MS FSI GPIKCN R +S S L FS IT N+C   +SLPR +H    +  N +SS S Q+
Sbjct: 1   MSLFSITGPIKCNNRIMSFSALPFS-ITNNNCCKYISLPRKLHRNVDIHYNSISSFSCQT 59

Query: 54  SAHRNLTSDRQRGLSLIAFDGNKNSEPVGEDDNQALDAVMKLYSAFKNKNTNELSEILAD 113
           S H NL   +QRGLS IAFD  KNSEPVGED++QALDAVMKLYSAFKNKN  ELSEILAD
Sbjct: 60  SIHENLYPRKQRGLSFIAFDSKKNSEPVGEDNDQALDAVMKLYSAFKNKNIQELSEILAD 119

Query: 114 ECSCVCNFLSFFQTFQGKTQVLEFFSSLISMLGDNIQIVVKPTLHDGMNVGVQWKFEWNK 173
           EC CVCNFLSFFQ FQGKTQVLEFFS LI + GDNIQIVVKPTLHDGMNVGV WKFEWN 
Sbjct: 120 ECRCVCNFLSFFQAFQGKTQVLEFFSHLIRLFGDNIQIVVKPTLHDGMNVGVHWKFEWNT 179

Query: 174 IHFPLGKGFSFHICQSYQGKAVIRNIE 200
           IH PLGKGFSFHICQ+Y+GKAVI+ ++
Sbjct: 180 IHIPLGKGFSFHICQTYRGKAVIKFVD 206


>Medtr2g025760.2 | transmembrane protein, putative | HC |
           chr2:9223437-9221355 | 20130731
          Length = 202

 Score =  290 bits (742), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 146/200 (73%), Positives = 158/200 (79%), Gaps = 6/200 (3%)

Query: 1   MSTFSIQGPIKCN-RTISLSPLSFSNITYNSCN-VSLPRNVH----VQGNFLSSISHQSS 54
           MS FSI GPIKCN R +S S L FS    N C  +SLPR +H    +  N +SS S Q+S
Sbjct: 1   MSLFSITGPIKCNNRIMSFSALPFSITNNNCCKYISLPRKLHRNVDIHYNSISSFSCQTS 60

Query: 55  AHRNLTSDRQRGLSLIAFDGNKNSEPVGEDDNQALDAVMKLYSAFKNKNTNELSEILADE 114
            H NL   +QRGLS IAFD  KNSEPVGED++QALDAVMKLYSAFKNKN  ELSEILADE
Sbjct: 61  IHENLYPRKQRGLSFIAFDSKKNSEPVGEDNDQALDAVMKLYSAFKNKNIQELSEILADE 120

Query: 115 CSCVCNFLSFFQTFQGKTQVLEFFSSLISMLGDNIQIVVKPTLHDGMNVGVQWKFEWNKI 174
           C CVCNFLSFFQ FQGKTQVLEFFS LI + GDNIQIVVKPTLHDGMNVGV WKFEWN I
Sbjct: 121 CRCVCNFLSFFQAFQGKTQVLEFFSHLIRLFGDNIQIVVKPTLHDGMNVGVHWKFEWNTI 180

Query: 175 HFPLGKGFSFHICQSYQGKA 194
           H PLGKGFSFHICQ+Y+GKA
Sbjct: 181 HIPLGKGFSFHICQTYRGKA 200


>Medtr5g010050.1 | SnoaL-like domain protein | HC |
           chr5:2613254-2611991 | 20130731
          Length = 264

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 7/152 (4%)

Query: 57  RNLTSDRQRGLSLIAFDGNKNSEPVGEDDNQALDAVMKLYSAFKNKNTNELSEILADECS 116
           +N T D  R  ++++  G K+    G++     + V   Y+    K   +L E ++ + +
Sbjct: 56  KNGTWDSNRISAILSKRGPKS----GKNSMSPAEIVDHFYTCINEKELKQLDEYISQD-A 110

Query: 117 CVCNFLSFFQTFQGKTQVLEFFSSLISMLGDNIQIVVKPTLH-DGMNVGVQWKFEWNKIH 175
           C  ++ +F   FQGK +V+ F   L + +G N++ +VK     D + V  +W  EW K  
Sbjct: 111 CFYDY-TFINPFQGKKEVMHFLQQLTAGMGQNVKFIVKNICEGDDLTVAAKWHLEWKKEQ 169

Query: 176 FPLGKGFSFHICQSYQGKAVIRNIEMVMEPLL 207
            P   G SF   +  +    IR  E+ +E L+
Sbjct: 170 IPFTTGCSFFQLEKVEENMTIRRAEIFIESLV 201


>Medtr7g018880.1 | nuclear transport factor 2 (NTF2) family protein
           | HC | chr7:6258169-6261112 | 20130731
          Length = 223

 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 7/129 (5%)

Query: 84  DDNQALDAVMKL----YSAFKNKNTNELSEILADECSCVCNFLSFFQTFQGKTQVLEFFS 139
           DDN+ +D+  K+    Y      + + +  ++++  +CV   L F + F G+ +++EFF 
Sbjct: 70  DDNKVVDSASKVVRNFYEGINAHDVDSVQYLISE--NCVYEDLVFPRPFVGRKEIIEFFK 127

Query: 140 SLISMLGDNIQIVVKP-TLHDGMNVGVQWKFEWNKIHFPLGKGFSFHICQSYQGKAVIRN 198
                   ++Q V+   +  D  +VGV W  EW    FP  KG SF+  +   GK  I  
Sbjct: 128 KFTESTSLDLQFVIDDLSTEDTSSVGVIWHLEWKGKPFPFSKGCSFYRLEVINGKRQITY 187

Query: 199 IEMVMEPLL 207
               +EP +
Sbjct: 188 GRDCVEPAI 196


>Medtr3g090440.1 | SnoaL-like domain protein | HC |
           chr3:41079404-41081631 | 20130731
          Length = 255

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 5/121 (4%)

Query: 92  VMKLYSAFKNKNTNELSEILADECSCVCNFLSFFQTFQGKTQVLEFFSSLISMLGDNIQI 151
           V + Y AF  K+T  L ++L+   +CV   L F+  ++G+  +++F+ S++  +G NI +
Sbjct: 90  VHEFYEAFNKKDTETLKQLLSP--NCVYQDLLFYTAYEGQESIIKFWQSVMDAMGPNIHV 147

Query: 152 VVKPTLH-DGMNVGVQWKFEWNKIHFPLGKGFSFHICQSYQGKAVIRNIEMVMEPLLYLK 210
            V+     + + V       W +   P   G  F   +  +GK +I  I  + E    LK
Sbjct: 148 FVEDVKESNHVMVTAFMHLVWKEKKLPFTNGCRFFTFEEVEGKFLISKITCMEE--FPLK 205

Query: 211 P 211
           P
Sbjct: 206 P 206