Miyakogusa Predicted Gene

Lj6g3v1629870.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1629870.1 Non Characterized Hit- tr|B9FG33|B9FG33_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,34.31,0.000000000000004,RNASE_3_1,Ribonuclease III domain; no
description,Ribonuclease III domain; Ribonuclease III
family,R,NODE_67609_length_564_cov_73.893616.path1.1
         (167 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g030490.1 | endoribonuclease dicer-like protein | HC | chr...   273   4e-74
Medtr1g060740.1 | endoribonuclease dicer-like protein | HC | chr...   267   4e-72
Medtr8g069975.1 | endoribonuclease dicer-like protein | HC | chr...   228   2e-60
Medtr7g118350.2 | endoribonuclease dicer-like protein | HC | chr...   137   4e-33
Medtr7g118350.1 | endoribonuclease dicer-like protein | HC | chr...   137   4e-33
Medtr3g105390.1 | endoribonuclease dicer-like protein | HC | chr...   133   7e-32
Medtr4g116860.1 | endoribonuclease dicer-like protein | HC | chr...   127   5e-30
Medtr8g077780.1 | endoribonuclease dicer-like protein | HC | chr...    91   7e-19
Medtr3g079980.1 | ribonuclease III domain protein | LC | chr3:36...    88   5e-18
Medtr3g079860.1 | ribonuclease III domain protein | LC | chr3:36...    80   6e-16
Medtr8g058930.1 | ribonuclease III domain protein | HC | chr8:20...    75   4e-14
Medtr3g096700.1 | ribonuclease III domain protein | HC | chr3:44...    74   4e-14
Medtr3g080000.1 | ribonuclease 3-like protein | HC | chr3:361608...    71   4e-13
Medtr8g077770.1 | dicer-like protein, putative | HC | chr8:33094...    71   6e-13
Medtr3g080020.1 | ribonuclease 3-like protein | HC | chr3:361739...    51   6e-07

>Medtr2g030490.1 | endoribonuclease dicer-like protein | HC |
            chr2:11495894-11486899 | 20130731
          Length = 1377

 Score =  273 bits (699), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 127/163 (77%), Positives = 143/163 (87%)

Query: 2    RNLKRKIIADVVEALIGAFLISGGENAALLFMDWVGIKVCFDIIPYERHFSTCVEKLVHI 61
            R LKRK++ADVVEALIGAFL +GGE AALLFMDW+GIKV F+IIPYER F  C + LV++
Sbjct: 1078 RKLKRKVVADVVEALIGAFLSAGGEMAALLFMDWIGIKVNFNIIPYERQFIACPDNLVNV 1137

Query: 62   SLLESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMYEKYPG 121
              LES LKYSFRD SLLVEALTHGSYMLP+VP CYQRLE+LGDS+LDYLIT+H+Y  YPG
Sbjct: 1138 RFLESLLKYSFRDRSLLVEALTHGSYMLPDVPRCYQRLEYLGDSVLDYLITMHLYRVYPG 1197

Query: 122  MSPGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHI 164
            MSPGQLTDMR+ASVNNDCYA SAIK  LHKH+LH SQ+LHKHI
Sbjct: 1198 MSPGQLTDMRSASVNNDCYAMSAIKVQLHKHVLHASQELHKHI 1240


>Medtr1g060740.1 | endoribonuclease dicer-like protein | HC |
            chr1:26454644-26463238 | 20130731
          Length = 1385

 Score =  267 bits (682), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 122/163 (74%), Positives = 142/163 (87%)

Query: 2    RNLKRKIIADVVEALIGAFLISGGENAALLFMDWVGIKVCFDIIPYERHFSTCVEKLVHI 61
            R LKRKI ADVVEALIGAFL +GGE AALLF+DWVGIKV F+I PYER F  C + L+++
Sbjct: 1080 RKLKRKIAADVVEALIGAFLSTGGEMAALLFLDWVGIKVNFNITPYERQFDACPDNLINV 1139

Query: 62   SLLESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMYEKYPG 121
            S LES LK+SFRD SLLVEA+THGSYMLP+VP CYQRLE+LGD++LDYLIT H+Y ++PG
Sbjct: 1140 SFLESLLKHSFRDRSLLVEAMTHGSYMLPDVPRCYQRLEYLGDAVLDYLITTHLYNEHPG 1199

Query: 122  MSPGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHI 164
            M+PGQLTDMR+ASVNNDCYA SAIK  LHKH+LH SQ+LHKHI
Sbjct: 1200 MTPGQLTDMRSASVNNDCYAMSAIKVQLHKHVLHASQELHKHI 1242


>Medtr8g069975.1 | endoribonuclease dicer-like protein | HC |
            chr8:29673147-29681500 | 20130731
          Length = 1219

 Score =  228 bits (581), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 103/138 (74%), Positives = 122/138 (88%)

Query: 2    RNLKRKIIADVVEALIGAFLISGGENAALLFMDWVGIKVCFDIIPYERHFSTCVEKLVHI 61
            R LKRK++ADVVEALIGAFL +GGE AALLFMDWVGIKV  +I PYER  ++C + L+++
Sbjct: 1082 RKLKRKVVADVVEALIGAFLSAGGEMAALLFMDWVGIKVNLNITPYERQINSCPDNLLNV 1141

Query: 62   SLLESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMYEKYPG 121
            S LES LKYSFRD SLLVEA+THGSYMLP+VP CYQRLE+LGDS+LDYLIT H+Y +YPG
Sbjct: 1142 SYLESLLKYSFRDRSLLVEAMTHGSYMLPDVPRCYQRLEYLGDSVLDYLITTHLYNEYPG 1201

Query: 122  MSPGQLTDMRAASVNNDC 139
            M+PGQLTDMR+ASVNN+C
Sbjct: 1202 MTPGQLTDMRSASVNNEC 1219


>Medtr7g118350.2 | endoribonuclease dicer-like protein | HC |
            chr7:49139858-49129556 | 20130731
          Length = 1841

 Score =  137 bits (346), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 102/170 (60%), Gaps = 6/170 (3%)

Query: 2    RNLKRKIIADVVEALIGAFLISGGENAALLFMDWVGIKVCFD-----IIPYERHFSTCVE 56
            R L  K +ADVVEALIG + + GG+NAA   M W+GI +  D      I    +    + 
Sbjct: 1439 RVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIHIEIDPDEMECITKPSNVPDSIL 1498

Query: 57   KLVHISLLESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMY 116
            + V    LE  L   F+D  LL+E++TH S     V +CYQRLEF+GD++LD+LIT H++
Sbjct: 1499 RSVDFDALEGALNIKFKDKGLLIESITHASRPSSGV-SCYQRLEFVGDAVLDHLITRHLF 1557

Query: 117  EKYPGMSPGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHITE 166
              Y  + PG+LTD+RAA+VNN+ +A   +K  LH H+ H S  L K I +
Sbjct: 1558 FSYTDLPPGRLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALEKQIKD 1607



 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 4/100 (4%)

Query: 55   VEKLVHISLLESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVH 114
            VE ++    L++ + Y  + S +L EALT  S    +   CY+R E LGD+ L ++++  
Sbjct: 1279 VESMLLAVQLKNMINYPVQASKIL-EALTAASC---QETFCYERAELLGDAYLKWVVSRF 1334

Query: 115  MYEKYPGMSPGQLTDMRAASVNNDCYAWSAIKAGLHKHIL 154
            ++ K+P    GQLT MR   V+N      A+  GL  +IL
Sbjct: 1335 LFLKHPQKHEGQLTRMRQQMVSNMVLYRYALSKGLQSYIL 1374


>Medtr7g118350.1 | endoribonuclease dicer-like protein | HC |
            chr7:49139858-49129556 | 20130731
          Length = 1880

 Score =  137 bits (346), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 102/170 (60%), Gaps = 6/170 (3%)

Query: 2    RNLKRKIIADVVEALIGAFLISGGENAALLFMDWVGIKVCFD-----IIPYERHFSTCVE 56
            R L  K +ADVVEALIG + + GG+NAA   M W+GI +  D      I    +    + 
Sbjct: 1478 RVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIHIEIDPDEMECITKPSNVPDSIL 1537

Query: 57   KLVHISLLESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMY 116
            + V    LE  L   F+D  LL+E++TH S     V +CYQRLEF+GD++LD+LIT H++
Sbjct: 1538 RSVDFDALEGALNIKFKDKGLLIESITHASRPSSGV-SCYQRLEFVGDAVLDHLITRHLF 1596

Query: 117  EKYPGMSPGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHITE 166
              Y  + PG+LTD+RAA+VNN+ +A   +K  LH H+ H S  L K I +
Sbjct: 1597 FSYTDLPPGRLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALEKQIKD 1646



 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 4/100 (4%)

Query: 55   VEKLVHISLLESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVH 114
            VE ++    L++ + Y  + S +L EALT  S    +   CY+R E LGD+ L ++++  
Sbjct: 1318 VESMLLAVQLKNMINYPVQASKIL-EALTAASC---QETFCYERAELLGDAYLKWVVSRF 1373

Query: 115  MYEKYPGMSPGQLTDMRAASVNNDCYAWSAIKAGLHKHIL 154
            ++ K+P    GQLT MR   V+N      A+  GL  +IL
Sbjct: 1374 LFLKHPQKHEGQLTRMRQQMVSNMVLYRYALSKGLQSYIL 1413


>Medtr3g105390.1 | endoribonuclease dicer-like protein | HC |
            chr3:48587251-48600607 | 20130731
          Length = 1730

 Score =  133 bits (335), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 73/165 (44%), Positives = 102/165 (61%), Gaps = 5/165 (3%)

Query: 7    KIIADVVEALIGAFLISGGENAALLFMDWVGIKVCFDIIPYERHFS-----TCVEKLVHI 61
            K IAD VEALIGA+ + GG  A+L  M W+GI    +    ++  +     T   K+  I
Sbjct: 1234 KTIADCVEALIGAYYVGGGLIASLHMMKWLGIDSGLEPSMVDKAITAASLHTYTPKVNEI 1293

Query: 62   SLLESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMYEKYPG 121
            + LE+K+ Y F    LLVEA TH S        CY+RLEFLGDS+LD LIT H+++ +  
Sbjct: 1294 ASLEAKIGYEFSVKGLLVEATTHLSESEHGTGCCYERLEFLGDSVLDLLITWHLFQSHTE 1353

Query: 122  MSPGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHITE 166
            + PG+LTD+R+ASVNN+ +A +A++  LH+H+LH S  L   I E
Sbjct: 1354 IDPGELTDLRSASVNNENFAQAAVRRNLHQHLLHSSGLLQSQILE 1398


>Medtr4g116860.1 | endoribonuclease dicer-like protein | HC |
            chr4:48375007-48390158 | 20130731
          Length = 1625

 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 96/159 (60%), Gaps = 12/159 (7%)

Query: 4    LKRKIIADVVEALIGAFLISGGENAALLFMDWVGIKVCFDIIPYERHFSTCVEKL----- 58
            L RK I+DVVEAL+GAF++  G  AA+ F+ W+G++V F+     +  + C   +     
Sbjct: 1139 LHRKTISDVVEALVGAFIVDSGFKAAIAFLTWIGMQVNFEA---SQVVNICTGSVGYFPL 1195

Query: 59   ---VHISLLESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHM 115
               V I  LE KL + F    LL++A  H SY       CYQRLEFLGD++LDYLIT ++
Sbjct: 1196 SSEVDIPSLEGKLGHHFVHKGLLLQAFVHPSYN-KHGGGCYQRLEFLGDAVLDYLITSYL 1254

Query: 116  YEKYPGMSPGQLTDMRAASVNNDCYAWSAIKAGLHKHIL 154
            Y  YP + PGQLTD+R+ SVNN  +A  A+    H+ +L
Sbjct: 1255 YSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRCFHEFLL 1293


>Medtr8g077780.1 | endoribonuclease dicer-like protein | HC |
          chr8:33094945-33095404 | 20130731
          Length = 67

 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 51/66 (77%)

Query: 12 VVEALIGAFLISGGENAALLFMDWVGIKVCFDIIPYERHFSTCVEKLVHISLLESKLKYS 71
          + EALIGAFL +GGE AALL+MDW+GIKV  +I PYER F+ C + L+ +S LES L YS
Sbjct: 2  LFEALIGAFLSAGGEMAALLYMDWIGIKVNINITPYERQFNACPDNLIIVSYLESLLNYS 61

Query: 72 FRDSSL 77
          FRD SL
Sbjct: 62 FRDRSL 67


>Medtr3g079980.1 | ribonuclease III domain protein | LC |
           chr3:36149988-36146306 | 20130731
          Length = 565

 Score = 87.8 bits (216), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/103 (42%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 64  LESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMYEKYPGMS 123
           +E+ L+Y F++  LL EA THG+Y   E    Y+RLE++GDS+L+ +IT   ++ YP ++
Sbjct: 230 VEAILEYEFKNKLLLEEAFTHGTYG-AENGLSYERLEYVGDSVLNLMITKEQFQAYPTLA 288

Query: 124 PGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHITE 166
           PG LT +RAA+V+ +  A  AIK GLH+++ H    L   I E
Sbjct: 289 PGHLTRLRAANVDTEKLARVAIKHGLHRYLRHKKPLLGDQIQE 331


>Medtr3g079860.1 | ribonuclease III domain protein | LC |
           chr3:36083908-36074928 | 20130731
          Length = 505

 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 62/92 (67%), Gaps = 1/92 (1%)

Query: 64  LESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMYEKYPGMS 123
           +E+ L+Y F++  LL EA TH +Y   E    Y+RLE++GDS+L+ +IT   +  YP ++
Sbjct: 169 VEAILEYEFKNILLLEEAFTHCTYGA-ENGLSYERLEYIGDSVLNLMITTEQFHAYPTLA 227

Query: 124 PGQLTDMRAASVNNDCYAWSAIKAGLHKHILH 155
           PG LT +RAA+V+ +  A  AIK GLH+++ H
Sbjct: 228 PGHLTRLRAANVDTEKLARVAIKYGLHRYVRH 259


>Medtr8g058930.1 | ribonuclease III domain protein | HC |
           chr8:20473610-20470150 | 20130731
          Length = 344

 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 68/106 (64%), Gaps = 3/106 (2%)

Query: 61  ISLLESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMYEKYP 120
           ++ +E  + Y+F +  LL +ALTH SY  PE    Y+RLEF+GD++L   I+ H++  Y 
Sbjct: 9   VAAVEKIIGYTFLNKKLLEDALTHTSY--PE-SVSYERLEFVGDAVLGLAISNHIFLSYT 65

Query: 121 GMSPGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHITE 166
            +  GQL+ +RAA+V+ +  A +A+  GLH+++ H + ++   I+E
Sbjct: 66  SVDAGQLSLLRAANVSTEKLARAAVNHGLHRYVRHNTVNIVHKISE 111


>Medtr3g096700.1 | ribonuclease III domain protein | HC |
           chr3:44257088-44253252 | 20130731
          Length = 344

 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 68/106 (64%), Gaps = 3/106 (2%)

Query: 61  ISLLESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMYEKYP 120
           ++ +E  + Y+FR+ +LL EALTH SY  PE    Y+RLEF+GD++L + I+ H++  Y 
Sbjct: 9   VAAVEKIIGYTFRNKNLLEEALTHSSY--PE-SVSYERLEFIGDAVLGHAISNHLFLVYT 65

Query: 121 GMSPGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHITE 166
            +   QL+ +R+A+V+ +  A +A+   LH++I   +  L +HI E
Sbjct: 66  NVDQRQLSLLRSANVSTEKLARAAVSNCLHRYIRLKTHSLAEHIRE 111


>Medtr3g080000.1 | ribonuclease 3-like protein | HC |
           chr3:36160813-36156170 | 20130731
          Length = 313

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 3/101 (2%)

Query: 64  LESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMYEKYPGMS 123
           +E  L Y F++  LL EALTH +Y        Y+RLE++GD++L+ L+    +  YP + 
Sbjct: 72  VEEILGYEFKNKQLLEEALTHTTYG---AENDYERLEYVGDAVLNLLMAREQFVSYPNLK 128

Query: 124 PGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHI 164
           PG LT +R+ +V+++  A  AI  GL +++ H    L + I
Sbjct: 129 PGILTQLRSKNVDSEKLARVAINHGLDRYLRHKKPQLGEQI 169


>Medtr8g077770.1 | dicer-like protein, putative | HC |
          chr8:33094768-33094406 | 20130731
          Length = 83

 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 32/44 (72%), Positives = 37/44 (84%)

Query: 54 CVEKLVHISLLESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQ 97
          C + LV++S  ES LKYSFRD SLLVEA+THGSYMLP+VP CYQ
Sbjct: 8  CRDNLVNVSYQESLLKYSFRDRSLLVEAMTHGSYMLPDVPRCYQ 51


>Medtr3g080020.1 | ribonuclease 3-like protein | HC |
           chr3:36173987-36169101 | 20130731
          Length = 124

 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 64  LESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMYEKYPGMS 123
           +E+ L Y F++  LL EA TH +Y   E    Y++LE+LGD++L  L+    +  YP + 
Sbjct: 58  VEAILGYEFKNKHLLEEAFTHSTYG-AEDDLSYEQLEYLGDAVLGLLVAKEQFFSYPNLK 116

Query: 124 PGQLTDMR 131
           P  LT +R
Sbjct: 117 PNFLTLLR 124