Miyakogusa Predicted Gene

Lj6g3v1629840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1629840.1 tr|B9IKF4|B9IKF4_POPTR Dicer-like protein
(Fragment) OS=Populus trichocarpa GN=DCL904 PE=4
SV=1,38.89,3e-19,RNase III domain-like,Ribonuclease III domain;
Ribonuclease_3,Ribonuclease III domain;
PAZ,Argonaute,NODE_76815_length_575_cov_56.106087.path1.1
         (184 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g060740.1 | endoribonuclease dicer-like protein | HC | chr...   274   3e-74
Medtr8g069975.1 | endoribonuclease dicer-like protein | HC | chr...   270   6e-73
Medtr2g030490.1 | endoribonuclease dicer-like protein | HC | chr...   268   2e-72
Medtr1g063410.1 | endoribonuclease dicer-like protein | LC | chr...   151   3e-37
Medtr4g116860.1 | endoribonuclease dicer-like protein | HC | chr...   120   8e-28
Medtr7g118350.1 | endoribonuclease dicer-like protein | HC | chr...   109   2e-24
Medtr7g118350.2 | endoribonuclease dicer-like protein | HC | chr...   109   2e-24
Medtr3g105390.1 | endoribonuclease dicer-like protein | HC | chr...    91   7e-19
Medtr1g063400.1 | dicer-like protein, putative | LC | chr1:27986...    74   6e-14

>Medtr1g060740.1 | endoribonuclease dicer-like protein | HC |
            chr1:26454644-26463238 | 20130731
          Length = 1385

 Score =  274 bits (701), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 134/185 (72%), Positives = 150/185 (81%), Gaps = 1/185 (0%)

Query: 1    MMNLDGTSPLKLKSGEVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHGPKQEKD 60
            +M LDG SPL++  GEVITYK YF + HG QL FEHQRLLKA+ +F VKNYCHG +Q KD
Sbjct: 844  IMELDGNSPLEVGDGEVITYKKYFGQKHGIQLRFEHQRLLKARHVFPVKNYCHGYRQAKD 903

Query: 61   REASKTFVELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNL-KMHMGSRWLN 119
            R+ SKTFVELPPELC +IMSPIS  TIYSFSFIPSIMHRLESLLVA+N  KMH+     N
Sbjct: 904  RDVSKTFVELPPELCSIIMSPISVRTIYSFSFIPSIMHRLESLLVALNFKKMHLSLCPQN 963

Query: 120  EIHALKVLEAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKI 179
             I   KVLEA+TTK CKE FHYESLETLGDSFLKYAV+Q LF  Y+NHHEGLL++KR KI
Sbjct: 964  SIQTFKVLEAMTTKSCKENFHYESLETLGDSFLKYAVSQQLFNMYENHHEGLLSVKREKI 1023

Query: 180  ISNAA 184
            I NAA
Sbjct: 1024 ICNAA 1028


>Medtr8g069975.1 | endoribonuclease dicer-like protein | HC |
            chr8:29673147-29681500 | 20130731
          Length = 1219

 Score =  270 bits (690), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 130/185 (70%), Positives = 150/185 (81%), Gaps = 1/185 (0%)

Query: 1    MMNLDGTSPLKLKSGEVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHGPKQEKD 60
            +M LDG SPL++  GEV TY+ YF++ HG QL FEHQRLLKA+ +F VKNYCHG +Q KD
Sbjct: 846  IMELDGNSPLEVGDGEVTTYQKYFEQKHGIQLRFEHQRLLKARHVFPVKNYCHGYRQAKD 905

Query: 61   REASKTFVELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNL-KMHMGSRWLN 119
            R+ SKTFVELPPELC +IMSPIS  T+Y+FSFIPSIMHRLESLLVA+N  KMH+     N
Sbjct: 906  RDVSKTFVELPPELCSIIMSPISVKTLYTFSFIPSIMHRLESLLVALNFKKMHLNHCPQN 965

Query: 120  EIHALKVLEAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKI 179
             I   KVLEA+TTK CKE FHYESLETLGDSFLKYAV+Q LF  Y+NHHEGLL++KR KI
Sbjct: 966  RIQTFKVLEAMTTKSCKENFHYESLETLGDSFLKYAVSQQLFNMYENHHEGLLSVKREKI 1025

Query: 180  ISNAA 184
            I NAA
Sbjct: 1026 ICNAA 1030


>Medtr2g030490.1 | endoribonuclease dicer-like protein | HC |
            chr2:11495894-11486899 | 20130731
          Length = 1377

 Score =  268 bits (686), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 131/185 (70%), Positives = 147/185 (79%), Gaps = 1/185 (0%)

Query: 1    MMNLDGTSPLKLKSGEVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHGPKQEKD 60
            MM LDG SPL++  GEV TYK YF + HG QL FEHQRLLKA+ +F VKNYCHG  Q KD
Sbjct: 842  MMELDGNSPLEVGDGEVTTYKKYFGQKHGIQLRFEHQRLLKARHVFPVKNYCHGYSQAKD 901

Query: 61   REASKTFVELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNLK-MHMGSRWLN 119
            R+ SKTFVELPPELC +IMSP+   T+Y+FSFIPSIMHRLESLL A N K MH+     N
Sbjct: 902  RDVSKTFVELPPELCSIIMSPVPLSTLYTFSFIPSIMHRLESLLGAYNFKRMHLDYCPQN 961

Query: 120  EIHALKVLEAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKI 179
            +I   KVLEA+TTK CKETFHYESLETLGDSFLKYAV+Q LF  YQNHHEGLL++KR KI
Sbjct: 962  KIQTFKVLEAMTTKSCKETFHYESLETLGDSFLKYAVSQQLFNMYQNHHEGLLSVKREKI 1021

Query: 180  ISNAA 184
            I NAA
Sbjct: 1022 ICNAA 1026


>Medtr1g063410.1 | endoribonuclease dicer-like protein | LC |
           chr1:27996452-27997028 | 20130731
          Length = 122

 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 76/122 (62%), Positives = 90/122 (73%), Gaps = 3/122 (2%)

Query: 2   MNLDGTSPLKLKSGEVITYKNYFKKN--HGTQLYFEHQRLLKAKRIFQVKNYCHGPKQEK 59
           M+LDG SPL++  GEV TYK YF +N  H  QL FEHQ LLKA+ +F  KNYCH  +Q K
Sbjct: 1   MDLDGNSPLEVGDGEVTTYKKYFGQNFRHDIQLRFEHQCLLKARHVFPAKNYCHEYRQAK 60

Query: 60  DREASKTFVELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNL-KMHMGSRWL 118
           DR+ S  FVELPPELC +IMSPIS  T+YSFSFIPSIMH LESLL+A+N  KMH+     
Sbjct: 61  DRDVSMAFVELPPELCSIIMSPISVRTLYSFSFIPSIMHILESLLLALNFKKMHLNQMQG 120

Query: 119 NE 120
           N+
Sbjct: 121 ND 122


>Medtr4g116860.1 | endoribonuclease dicer-like protein | HC |
            chr4:48375007-48390158 | 20130731
          Length = 1625

 Score =  120 bits (301), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 73/186 (39%), Positives = 106/186 (56%), Gaps = 9/186 (4%)

Query: 5    DGTSPLKLKSGEVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHGPKQEKDR--- 61
            +G SP K  + E  ++ ++  +     L    Q LL AK++F + N  H  K   D    
Sbjct: 887  NGFSPHK--NSETSSFVDHLNEKFSINLKRPEQPLLHAKQLFNLHNLLHDRKNADDEVTE 944

Query: 62   --EASKTFVELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNLKMHMGSRW-- 117
              E  + FV  PPELC + +   S     S S +PSIMHRL +LLVA+ L+  + S +  
Sbjct: 945  PHELEEHFVYFPPELCELKIVGFSKDIGSSISLLPSIMHRLGNLLVAIELRNQLSSSFPE 1004

Query: 118  LNEIHALKVLEAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRV 177
              EI A +VLEA+TT++C+E F  E LE LGD+FLK++V +H F  + + HEG LT KR 
Sbjct: 1005 AAEISAHRVLEALTTEQCQERFSLERLEVLGDAFLKFSVARHFFLLHDSFHEGDLTSKRS 1064

Query: 178  KIISNA 183
             I++N+
Sbjct: 1065 NIVNNS 1070


>Medtr7g118350.1 | endoribonuclease dicer-like protein | HC |
            chr7:49139858-49129556 | 20130731
          Length = 1880

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 99/175 (56%), Gaps = 14/175 (8%)

Query: 16   EVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKN-------YCHGPKQEKDREASKTF- 67
            E  +Y +Y+K+ +G  L ++ Q L++ + +   KN       +  G + E +    KT+ 
Sbjct: 1228 EYSSYADYYKQKYGVDLAYKQQPLIRGRGVSYCKNLLSPRFEHSEGHEDETEETHDKTYY 1287

Query: 68   VELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNLKMHMGSRWLNEIHALKVL 127
            V LPPELC V   P+    +     +PSIM R+ES+L+AV LK  +       + A K+L
Sbjct: 1288 VFLPPELCLV--HPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINY----PVQASKIL 1341

Query: 128  EAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKIISN 182
            EA+T   C+ETF YE  E LGD++LK+ V++ LF  +   HEG LT  R +++SN
Sbjct: 1342 EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKHPQKHEGQLTRMRQQMVSN 1396


>Medtr7g118350.2 | endoribonuclease dicer-like protein | HC |
            chr7:49139858-49129556 | 20130731
          Length = 1841

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 99/175 (56%), Gaps = 14/175 (8%)

Query: 16   EVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKN-------YCHGPKQEKDREASKTF- 67
            E  +Y +Y+K+ +G  L ++ Q L++ + +   KN       +  G + E +    KT+ 
Sbjct: 1189 EYSSYADYYKQKYGVDLAYKQQPLIRGRGVSYCKNLLSPRFEHSEGHEDETEETHDKTYY 1248

Query: 68   VELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNLKMHMGSRWLNEIHALKVL 127
            V LPPELC V   P+    +     +PSIM R+ES+L+AV LK  +       + A K+L
Sbjct: 1249 VFLPPELCLV--HPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINY----PVQASKIL 1302

Query: 128  EAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKIISN 182
            EA+T   C+ETF YE  E LGD++LK+ V++ LF  +   HEG LT  R +++SN
Sbjct: 1303 EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKHPQKHEGQLTRMRQQMVSN 1357


>Medtr3g105390.1 | endoribonuclease dicer-like protein | HC |
            chr3:48587251-48600607 | 20130731
          Length = 1730

 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 102/193 (52%), Gaps = 18/193 (9%)

Query: 4    LDGTSPLKLKSG--EVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKN-YCHGPKQEKD 60
             DG S    KSG  + +T+  YF+K +G  L    Q LL+ K+     N + + P+++  
Sbjct: 971  FDGNSD---KSGAEDKMTFTQYFQKRYGITLRHPEQPLLRLKQGHNAHNLFLNLPEEDGG 1027

Query: 61   REASKT---------FVELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNLKM 111
             ++S+           V +P EL C++   +      S   +PS+M+R+ESL+++  L+ 
Sbjct: 1028 DKSSQVGPVAPKVPVHVHIPSELLCLL--DVKRDVYKSMYLLPSLMYRIESLMLSSQLRA 1085

Query: 112  HMGSRWLN-EIHALKVLEAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEG 170
             +     N +I +  VLEA+TT RC E F  E LE LGDS LKYAV+ HL+  Y   HEG
Sbjct: 1086 EINGHTDNFKIPSSLVLEALTTLRCCEKFSMERLELLGDSVLKYAVSCHLYLKYPKKHEG 1145

Query: 171  LLTLKRVKIISNA 183
             L+  R   + N+
Sbjct: 1146 HLSSLRQWAVRNS 1158


>Medtr1g063400.1 | dicer-like protein, putative | LC |
           chr1:27986761-27987875 | 20130731
          Length = 149

 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 47/64 (73%), Gaps = 1/64 (1%)

Query: 48  VKNYCHGPKQEKDREASKTFVELPPELCCVIMSPISDITIYSFSFIPSIMHRLES-LLVA 106
           VK   H      +++ SKTFV LP ELC +IMSPIS  T+YSFSFIPSIMHRLES LLVA
Sbjct: 45  VKCLHHEANIWTEKDVSKTFVNLPYELCSIIMSPISVRTLYSFSFIPSIMHRLESLLLVA 104

Query: 107 VNLK 110
           +N K
Sbjct: 105 LNFK 108