Miyakogusa Predicted Gene
- Lj6g3v1370730.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1370730.1 tr|C7J245|C7J245_ORYSJ Os05g0523100 protein
OS=Oryza sativa subsp. japonica GN=Os05g0523100 PE=4
SV=,29.91,5e-19,Rep_fac-A_C,Replication factor A, C-terminal;
seg,NULL; Nucleic acid-binding proteins,Nucleic acid-b,CUFF.60001.1
(254 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g110100.1 | replication factor-A carboxy-terminal domain p... 85 7e-17
Medtr1g105785.1 | replication factor-A carboxy-terminal domain p... 82 5e-16
Medtr2g048560.1 | replication factor-A carboxy-terminal domain p... 82 6e-16
Medtr7g051400.1 | replication factor-A carboxy-terminal domain p... 80 2e-15
Medtr4g032565.1 | replication factor-A carboxy-terminal domain p... 78 8e-15
Medtr4g032585.1 | replication factor-A carboxy-terminal domain p... 77 1e-14
Medtr4g070090.1 | replication factor-A-like protein | HC | chr4:... 75 8e-14
Medtr5g027390.1 | replication factor-A-like protein | LC | chr5:... 74 1e-13
Medtr6g445520.1 | replication factor-A carboxy-terminal domain p... 73 3e-13
Medtr5g078250.1 | replication factor-A carboxy-terminal domain p... 68 1e-11
Medtr8g039210.1 | replication factor-A carboxy-terminal domain p... 67 2e-11
Medtr4g036240.1 | replication factor-A carboxy-terminal domain p... 64 2e-10
Medtr4g036240.3 | replication factor-A carboxy-terminal domain p... 64 2e-10
Medtr3g056270.1 | replication factor-A carboxy-terminal domain p... 64 2e-10
Medtr4g036240.2 | replication factor-A carboxy-terminal domain p... 63 2e-10
Medtr1g492690.1 | hypothetical protein | HC | chr1:41541171-4153... 62 5e-10
Medtr5g057125.1 | replication factor-A carboxy-terminal domain p... 61 9e-10
Medtr8g062030.1 | replication factor-A carboxy-terminal domain p... 59 3e-09
Medtr2g048550.1 | replication factor-A carboxy-terminal domain p... 59 5e-09
Medtr4g040040.1 | replication factor-A carboxy-terminal domain p... 59 6e-09
Medtr5g004860.1 | replication factor-A carboxy-terminal domain p... 58 9e-09
Medtr4g060433.1 | replication factor-A carboxy-terminal domain p... 57 2e-08
Medtr5g041170.1 | replication factor-A carboxy-terminal domain p... 57 2e-08
Medtr2g008650.1 | replication factor-A carboxy-terminal domain p... 56 4e-08
Medtr8g479260.1 | replication factor-A carboxy-terminal domain p... 56 4e-08
Medtr2g450060.1 | replication factor-A carboxy-terminal domain p... 55 8e-08
Medtr8g104590.1 | replication factor-A carboxy-terminal domain p... 54 1e-07
Medtr4g046077.1 | replication factor-A carboxy-terminal domain p... 54 1e-07
Medtr6g051890.1 | replication factor-A carboxy-terminal domain p... 52 4e-07
Medtr4g085760.1 | replication factor-A carboxy-terminal domain p... 49 4e-06
>Medtr7g110100.1 | replication factor-A carboxy-terminal domain
protein | HC | chr7:45127464-45130150 | 20130731
Length = 526
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 5/151 (3%)
Query: 17 VATTQEKVFTILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFK 76
+ ++ + V +LA+I I+ + W Y AC KC ++ + CP CN+ ++ PRFK
Sbjct: 281 IESSDQCVVIVLASIIGIEAEYSWYYDACTKCAGRIKIIAGRMFCPRCNQ-SRNAVPRFK 339
Query: 77 IQLEVSDETAAAKLTLFDRDAQQLLHTTASELL----QHGSNKEIPPVLRNLCKQTLIFE 132
+ ++V D T + LFDR+ + + +L+ Q ++K P L L + ++F+
Sbjct: 340 LHVQVMDNTGSTSFILFDRNVSNYVGKSVQDLIDSQGQGNNDKGYPSDLDVLVGKKMLFK 399
Query: 133 IKLSDHNLKEGSQNYTVTRTFIPTSLIEEQS 163
++++D NL +NY V RT LI + S
Sbjct: 400 VEITDGNLHLSWRNYGVKRTTDDPDLISQFS 430
>Medtr1g105785.1 | replication factor-A carboxy-terminal domain
protein | HC | chr1:47732917-47735741 | 20130731
Length = 566
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 3/128 (2%)
Query: 27 ILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKIQLEVSDETA 86
+LATI I+ + W Y AC KC ++ + C CN + PRFK+ ++V D T
Sbjct: 291 VLATICGIESEYSWYYQACTKCAGRVRTVAGRLYCGKCN-TGRNAVPRFKLHVQVMDNTG 349
Query: 87 AAKLTLFDRDAQQLLHTTASELL--QHGSNKEIPPVLRNLCKQTLIFEIKLSDHNLKEGS 144
+ LFDR+ ++ T +++ Q ++ + P L + + ++F++++SD NL
Sbjct: 350 STSFILFDRNVSSYVNRTVQDMIDAQPNNSSDYPSDLDSFVGKRMLFKVEVSDGNLLHNW 409
Query: 145 QNYTVTRT 152
+NY V RT
Sbjct: 410 RNYAVKRT 417
>Medtr2g048560.1 | replication factor-A carboxy-terminal domain
protein | LC | chr2:21416239-21412307 | 20130731
Length = 549
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 83/157 (52%), Gaps = 5/157 (3%)
Query: 20 TQEKVFTILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKIQL 79
+EK F + T+N I D W Y +C C KK+ Y C CN+ TPR+ I++
Sbjct: 284 AEEKCFAVFGTVNVIVDDSDWWYTSCVVCNKKVYPDEKMYFCSKCNKHVLNVTPRYMIKM 343
Query: 80 EVSDETAAAKLTLFDRDAQQLLHTTASELLQH---GSN-KEIPPVLRNLCKQTLIFEIKL 135
V D T +A LFDRDA +L T +++++ G++ E+P + + +++ +F+++
Sbjct: 344 RVVDHTDSATFVLFDRDAAELFKKTCADMIESCGMGTDASEVPKDILAMVEKSYLFKVET 403
Query: 136 SDHNLKEGSQNYTVTRTFIPTSLIEE-QSTHKSVQKD 171
+ + ++Y V R L+E+ Q+ +K + K+
Sbjct: 404 NLGSSTMYEKSYRVKRVTADPVLVEKFQTKYKDLMKN 440
>Medtr7g051400.1 | replication factor-A carboxy-terminal domain
protein | LC | chr7:18001910-18004476 | 20130731
Length = 542
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Query: 27 ILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKIQLEVSDETA 86
+LATI I+ + W Y AC KC+ ++ + C CN + RFK+ ++V D T
Sbjct: 269 VLATICGIESEYSWYYQACTKCVGRVRTVASRLYCGKCN-TGRNAVARFKLHVQVIDNTG 327
Query: 87 AAKLTLFDRDAQQLLHTTASELL--QHGSNKEIPPVLRNLCKQTLIFEIKLSDHNLKEGS 144
+ LFDR+ + ++ T +++ Q ++ + P L + + ++F++++SD NL
Sbjct: 328 STSFILFDRNVSKYVNGTIQDMIDAQPNNSSDYPSDLDSFVGKQMLFKVEVSDGNLLHNW 387
Query: 145 QNYTVTRT 152
+NY V RT
Sbjct: 388 RNYVVKRT 395
>Medtr4g032565.1 | replication factor-A carboxy-terminal domain
protein | LC | chr4:11217564-11219039 | 20130731
Length = 286
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 27 ILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKIQLEVSDETA 86
+ A+I I+ +GW Y AC KC ++ + CP C + ++ PRFK+ ++V D T
Sbjct: 35 VFASICGIEPEYGWYYDACTKCAGRITIVAGRMFCPRCKQ-SRNAVPRFKLHVQVMDTTG 93
Query: 87 AAKLTLFDRDAQQLLHTTASELL----QHGSNKEIPPVLRNLCKQTLIFEIKLSDHNLKE 142
+ LFDR+ + + +L+ Q ++ P L L + ++F++ +++ NL
Sbjct: 94 STSFILFDRNVSNYVGRSVQDLIDAQGQGDNSLGYPADLEVLVGKKMLFKVDITNGNLLH 153
Query: 143 GSQNYTVTRTFIPTSLIE 160
+NY V RT LI+
Sbjct: 154 NWRNYGVKRTSDDAELIQ 171
>Medtr4g032585.1 | replication factor-A carboxy-terminal domain
protein | LC | chr4:11228071-11229546 | 20130731
Length = 286
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 27 ILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKIQLEVSDETA 86
+ A+I I+ +GW Y AC KC ++ + CP C + ++ PRFK+ ++V D T
Sbjct: 35 VFASICGIEPEYGWYYDACTKCAGRITIVAGRMFCPRCKQ-SRNVVPRFKLHVQVMDTTG 93
Query: 87 AAKLTLFDRDAQQLLHTTASELL----QHGSNKEIPPVLRNLCKQTLIFEIKLSDHNLKE 142
+ LFDR+ + + +L+ Q ++ P L L + ++F++ +++ NL
Sbjct: 94 STSFILFDRNVSNYVGRSVQDLIDAQGQGDNSLGYPADLEVLVGKKMLFKVDITNGNLLH 153
Query: 143 GSQNYTVTRTFIPTSLIE 160
+NY V RT LI+
Sbjct: 154 NWRNYGVKRTSDDAELIQ 171
>Medtr4g070090.1 | replication factor-A-like protein | HC |
chr4:26377794-26380276 | 20130731
Length = 502
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 74/144 (51%), Gaps = 5/144 (3%)
Query: 24 VFTILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKIQLEVSD 83
V+ +AT++DI G Y++C C K ++ + C C + YP R++++L+V+D
Sbjct: 310 VYNCVATVDDILLKNGLYYVSCPHCRKTVSSTETDFNCEHCTKKVDYPKIRYRLELQVND 369
Query: 84 ETAAAKLTLFDRDAQQLLHTTASELL-----QHGSNKEIPPVLRNLCKQTLIFEIKLSDH 138
T + LF A+QL +L Q G + ++P L+++ IF++KLS +
Sbjct: 370 STESTIFVLFAEVAEQLAQLKLDDLTPDLENQTGRDSDLPKQLQHIIGSKHIFQVKLSSY 429
Query: 139 NLKEGSQNYTVTRTFIPTSLIEEQ 162
+ G Q++T + P IE++
Sbjct: 430 FERRGVQSFTAHKILKPVVKIEKE 453
>Medtr5g027390.1 | replication factor-A-like protein | LC |
chr5:11382204-11385197 | 20130731
Length = 477
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 74/144 (51%), Gaps = 5/144 (3%)
Query: 24 VFTILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKIQLEVSD 83
V+ +AT++DI G Y++C C K ++ + C C + YP R++++L+V+D
Sbjct: 278 VYNCVATVDDILLKNGLYYVSCPHCRKTVSSTETDFNCEHCTKKVDYPKIRYRLELQVND 337
Query: 84 ETAAAKLTLFDRDAQQLLHTTASELL-----QHGSNKEIPPVLRNLCKQTLIFEIKLSDH 138
T + LF A+QL +L Q G + ++P L+++ IF++KLS +
Sbjct: 338 STESTIFVLFAEVAEQLAQLKLDDLTPDLENQTGRDSDLPKQLQHIIGSKHIFQVKLSSY 397
Query: 139 NLKEGSQNYTVTRTFIPTSLIEEQ 162
+ G Q++T + P IE++
Sbjct: 398 FERRGVQSFTAHKILKPVVKIEKE 421
>Medtr6g445520.1 | replication factor-A carboxy-terminal domain
protein | HC | chr6:15886770-15884303 | 20130731
Length = 428
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 21 QEKVFTILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKIQLE 80
E F + AT+ + DT W Y AC C KK+ + C CN+ + PR+ I++
Sbjct: 151 MESCFVVKATVKFVIDTDEWWYTAC-VCNKKVVPDEKMFFCAKCNKHVIHVCPRYMIKVR 209
Query: 81 VSDETAAAKLTLFDRDAQQLLHTTASELLQHGSNKE---IPPVLRNLCKQTLIFEIKLSD 137
V DET +A +FDRDA LL TA+++++ + E +P + +L + T +F+++ +
Sbjct: 210 VIDETDSATFVIFDRDATLLLKKTAADVIESMGSDESGTLPKEISSLVESTFLFKVETNI 269
Query: 138 HNLKEGSQNYTVTR 151
++Y V R
Sbjct: 270 STDARFEKSYRVRR 283
>Medtr5g078250.1 | replication factor-A carboxy-terminal domain
protein | LC | chr5:33436158-33438920 | 20130731
Length = 517
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 8 IPNKMAMKWVATTQEKVFTILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEP 67
P K + +T ++ VF + ATI + D W Y AC KC + ++ + C C +
Sbjct: 271 FPKKTLEQLHSTFEDGVFVVYATIGGLVDHEDWWYPAC-KCHRSVSADSGAFYCKGCAKH 329
Query: 68 AKYPTPRFKIQLEVSDETAAAKLTLFDRDAQQLLHTTASELLQHGSNK---EIPPVLRNL 124
PRF++++ VSD T +FD D Q LL+T S L+ + PP L
Sbjct: 330 VFQMVPRFRVKVNVSDATNVGVFVVFDGDMQNLLNTPCSSLVSVAKAENAGHYPPEFEKL 389
Query: 125 CKQTLIFEIK 134
+ ++F+++
Sbjct: 390 KGKKMLFKVE 399
>Medtr8g039210.1 | replication factor-A carboxy-terminal domain
protein | LC | chr8:14593466-14588967 | 20130731
Length = 678
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 4/143 (2%)
Query: 24 VFTILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKIQLEVSD 83
V+ +AT++DI G YI+C C K ++ + C C + Y R++++L +D
Sbjct: 53 VYNCVATVDDILLKNGLYYISCPHCRKTVSSTETDFNCEYCTKKVDYLKIRYRLELPFND 112
Query: 84 ETAAAKLTLFDRDAQQL----LHTTASELLQHGSNKEIPPVLRNLCKQTLIFEIKLSDHN 139
T + LF A+QL L +L G + +P L+++ IF++KLS +
Sbjct: 113 STKSTIFVLFAEVAEQLAQLKLDDLTPDLENTGRDSNLPKQLQHIIGSKHIFQVKLSSYF 172
Query: 140 LKEGSQNYTVTRTFIPTSLIEEQ 162
+ G Q++T + P IE++
Sbjct: 173 ERRGIQSFTAHKILKPIVKIEKE 195
>Medtr4g036240.1 | replication factor-A carboxy-terminal domain
protein | HC | chr4:11830642-11833873 | 20130731
Length = 560
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 21 QEKVFTILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKIQLE 80
QE ++ +L T+ I + W Y AC C K + + C CN PR+ I++
Sbjct: 284 QEGMYVVLGTVKQIVNPENWYYTACM-CNKSVYPAEGMHFCEKCNRHVVKVFPRYSIKVR 342
Query: 81 VSDETAAAKLTLFDRDAQQLLHTTASELLQ-HGSNKEIPPV-LRNLCKQTLIFEIKL 135
V D++ A LFDRDA L + + +++L+ H +++ + P + L T +F+++
Sbjct: 343 VVDDSDCATFVLFDRDATMLFNKSCADILETHRADEGVLPTEIAALVNCTYLFKVEF 399
>Medtr4g036240.3 | replication factor-A carboxy-terminal domain
protein | HC | chr4:11830210-11833873 | 20130731
Length = 417
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 21 QEKVFTILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKIQLE 80
QE ++ +L T+ I + W Y AC C K + + C CN PR+ I++
Sbjct: 141 QEGMYVVLGTVKQIVNPENWYYTACM-CNKSVYPAEGMHFCEKCNRHVVKVFPRYSIKVR 199
Query: 81 VSDETAAAKLTLFDRDAQQLLHTTASELLQ-HGSNKEIPPV-LRNLCKQTLIFEIKL 135
V D++ A LFDRDA L + + +++L+ H +++ + P + L T +F+++
Sbjct: 200 VVDDSDCATFVLFDRDATMLFNKSCADILETHRADEGVLPTEIAALVNCTYLFKVEF 256
>Medtr3g056270.1 | replication factor-A carboxy-terminal domain
protein | HC | chr3:22409504-22413525 | 20130731
Length = 719
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 21 QEKVFTILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKIQLE 80
QE ++ +L T+ I + W Y AC C K + + C CN PR+ I++
Sbjct: 443 QEGMYVVLGTVKQIVNPENWYYTACM-CNKSVYPAEGMHFCEKCNRHVVKVFPRYSIKVR 501
Query: 81 VSDETAAAKLTLFDRDAQQLLHTTASELLQ-HGSNKEIPPV-LRNLCKQTLIFEIKL 135
V D++ A LFDRDA L + + +++L+ H +++ + P + L T +F+++
Sbjct: 502 VVDDSDCATFVLFDRDATMLFNKSCADILETHRADEGVLPTEIGALVNCTYLFKVEF 558
>Medtr4g036240.2 | replication factor-A carboxy-terminal domain
protein | HC | chr4:11830210-11833873 | 20130731
Length = 480
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 21 QEKVFTILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKIQLE 80
QE ++ +L T+ I + W Y AC C K + + C CN PR+ I++
Sbjct: 204 QEGMYVVLGTVKQIVNPENWYYTACM-CNKSVYPAEGMHFCEKCNRHVVKVFPRYSIKVR 262
Query: 81 VSDETAAAKLTLFDRDAQQLLHTTASELLQ-HGSNKEIPPV-LRNLCKQTLIFEIKL 135
V D++ A LFDRDA L + + +++L+ H +++ + P + L T +F+++
Sbjct: 263 VVDDSDCATFVLFDRDATMLFNKSCADILETHRADEGVLPTEIAALVNCTYLFKVEF 319
>Medtr1g492690.1 | hypothetical protein | HC |
chr1:41541171-41539306 | 20130731
Length = 365
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 17 VATTQEKVFTILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFK 76
+ ++++ V ++L ++ D G AC KC ++ Q C +FK
Sbjct: 84 IESSEKCVASVLVRTSEFDTDSGRFNRACSKCASRITTINGQIYCD-----------KFK 132
Query: 77 IQLEVSDETAAAKLTLFDRDAQQLLHTTASELLQHGSNK---EIPPVLRNLCKQTLIFEI 133
+ LEV D T + L+DR Q + +A L + K EIPP L Q ++F++
Sbjct: 133 LHLEVIDNTGSTTFVLYDRVVTQAVGKSAQYFLHAMTEKNSAEIPPELNMFVDQRMLFKV 192
Query: 134 KLSDHNLKEGSQNYTVTRTFIPTSLI 159
++SD NL ++YTV + + +I
Sbjct: 193 EVSDSNLYRNWRSYTVRKLTMDDDII 218
>Medtr5g057125.1 | replication factor-A carboxy-terminal domain
protein | LC | chr5:23566558-23564881 | 20130731
Length = 298
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 16/141 (11%)
Query: 21 QEKVFTILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKIQLE 80
Q + +LA I ID W Y++C+KC KK+ P C T RF + +
Sbjct: 82 QVGAYVVLAKIIGIDTNKKWCYVSCNKCFKKVK--------PVC-------TKRFMVHIH 126
Query: 81 VSDETAAAKLTLFDRDAQQLLHTTASELLQHGSNKEIPPVLRNLCKQTLIFEIKLSDHNL 140
V D++ + LFD Q TA E + +N + P NL + ++F+++++ N+
Sbjct: 127 VMDDSGSTTFVLFDGVISQHFGMTAKEQMGMTTN-DYPTEFDNLHDKEMLFKLEINQKNV 185
Query: 141 KEGSQNYTVTRTFIPTSLIEE 161
++ Y V + +I+E
Sbjct: 186 EQRFYTYAVKKMCDDNEIIDE 206
>Medtr8g062030.1 | replication factor-A carboxy-terminal domain
protein | LC | chr8:25901653-25904109 | 20130731
Length = 575
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 8/156 (5%)
Query: 9 PNKMAMKWVATTQEKVFTILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPA 68
P K + + ++ F + A ++ + W Y AC KC + + Y C C++
Sbjct: 273 PKKTISQLFNSEEDGFFVVSAIVSGFVEGEEWWYPAC-KCHRSVTADSGAYYCKGCDKHV 331
Query: 69 KYPTPRFKIQLEVSDETAAAKLTLFDRDAQQLLHTTASELLQHGSNKEI---PPVLRNLC 125
PR+KI+L V D T + LFD D LL S L+ ++ PP + L
Sbjct: 332 IQMVPRYKIKLRVDDGTGDSVFVLFDSDVHYLLEKQCSVLVAKSKGDDVGFYPPEIVMLK 391
Query: 126 KQTLIFEIK--LSDHNLKEGSQNYTVTRTFIPTSLI 159
+ +F++ + +GS Y V R +S++
Sbjct: 392 GKRFLFKVDKPVISGGFFDGS--YRVKRVCADSSIV 425
>Medtr2g048550.1 | replication factor-A carboxy-terminal domain
protein | LC | chr2:21410361-21406613 | 20130731
Length = 495
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Query: 34 IDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKIQLEVSDETAAAKLTLF 93
+DD GW Y+ C C K++ G + C C++ PR+K++ V D T A +F
Sbjct: 300 LDD--GWWYVGC-VCKKRVFPDGGMFFCAKCSKHVFNVKPRYKVKFNVFDHTGEANFIVF 356
Query: 94 DRDAQQLLHTTASELLQHGSNKEI------PPVLRNLCKQTLIFEIKLSDHNLKEGSQNY 147
D+ + L T +EL+ G+N I P L + L+F++ + K + Y
Sbjct: 357 DKALEMFLQRTCAELV--GANGMIADVDHVPAELVGMTNNPLLFKVAVDASLDKVAEKVY 414
Query: 148 TV 149
V
Sbjct: 415 VV 416
>Medtr4g040040.1 | replication factor-A carboxy-terminal domain
protein | LC | chr4:14260390-14261092 | 20130731
Length = 168
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 5/146 (3%)
Query: 27 ILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKIQLEVSDETA 86
I+AT++ GW +++C C +++ Y C CN+ TPRF+I V+D T
Sbjct: 4 IMATVDQYVTDDGWWFLSC-ICHEQVVPDSPAYYCERCNKHVLMITPRFRITFHVTDNTG 62
Query: 87 AAKLTLFDRDAQQLLHTTASELLQHGSN----KEIPPVLRNLCKQTLIFEIKLSDHNLKE 142
+A + D A + S++L+ G N +P L N+ + +F++ +
Sbjct: 63 SATFLMHDSVAAEFFGIPCSKMLEFGENVGMSSYVPDELLNMVGKCYLFKVFSKVGAGCD 122
Query: 143 GSQNYTVTRTFIPTSLIEEQSTHKSV 168
G + Y +++ L+ H SV
Sbjct: 123 GEKCYPISKINDDEELLGRFKRHNSV 148
>Medtr5g004860.1 | replication factor-A carboxy-terminal domain
protein | LC | chr5:159787-157165 | 20130731
Length = 540
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 28 LATINDIDDT-FGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKIQLEVSDETA 86
+A + ++ T FGW Y AC KC K Y C + + + R+K+ L VS E
Sbjct: 293 VAEVEKVNSTKFGWYYFACFKCGKIAKGDNPPYTCESGHN-TETEIVRYKLDLNVSYENT 351
Query: 87 AAKLTLFDRDAQQLLHTTASEL----LQHG-SNK-EIPPVLRNLCKQTLIFEIK 134
++DR+A QLL +A++L +Q G +N+ E P +L + ++T +F++K
Sbjct: 352 KGTFVMWDREATQLLGISAAQLRTNMIQAGITNRLEYPMLLDGIGEKTYVFKVK 405
>Medtr4g060433.1 | replication factor-A carboxy-terminal domain
protein | LC | chr4:22207030-22208141 | 20130731
Length = 207
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 26 TILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKIQLEVSDET 85
T+LATI +I+ W + +C +C + + C C E K PRFK+ L V DET
Sbjct: 34 TVLATICEIETGVEWFFRSCTQCASLVTVVDGKLSCKRCKE-CKSVVPRFKLHLIVMDET 92
Query: 86 AAAKLTLFDRDAQQLLHTTASEL---LQHGSN 114
++ + LFDR Q++ L + GSN
Sbjct: 93 SSTTIVLFDRFVTQIIERNVQNLSSKMNKGSN 124
>Medtr5g041170.1 | replication factor-A carboxy-terminal domain
protein | LC | chr5:18079249-18077033 | 20130731
Length = 445
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 9/134 (6%)
Query: 9 PNKMAMKWVATTQEKVFTI-LATINDIDDT-FGWSYIACHKCMKKLNKRGDQYMCPTCNE 66
P M + + QE + + +A + ++ T FGW Y AC KC K Y C + +
Sbjct: 180 PLIMPLADILQLQEISYCVTVAEVEKVNSTKFGWYYFACFKCGKIAKGDNPPYTCESGHN 239
Query: 67 PAKYPTPRFKIQLEVSDETAAAKLTLFDRDAQQLLHTTASEL----LQHG-SNK-EIPPV 120
+ R+K+ L VS E ++DR+A QLL +A++L +Q G +N+ + P +
Sbjct: 240 -TETEIVRYKLDLNVSYENTKGTFVMWDREATQLLGISAAQLRTNMIQAGITNRLDYPML 298
Query: 121 LRNLCKQTLIFEIK 134
L + ++T +F++K
Sbjct: 299 LDGIGEKTYVFKVK 312
>Medtr2g008650.1 | replication factor-A carboxy-terminal domain
protein | LC | chr2:1569207-1566568 | 20130731
Length = 555
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 18 ATTQEKVFTILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKI 77
ATT E V+ +L TI I + + Y AC C K + + C C+ K R+ +
Sbjct: 286 ATTNE-VYVVLGTIKRIVNRENFWYTACI-CSKAVIPDSQMFYCEKCDRHVKKVFSRYCL 343
Query: 78 QLEVSDETAAAKLTLFDRDAQQLLHTTASELL-QHG---SNKEIPPVLRNLCKQTLIFEI 133
++ D T A L +FD++A L + + ++L +HG S +PP + + +T +F++
Sbjct: 344 RVRAIDHTDCATLVIFDKEATALFNKSCVDMLAEHGVAVSEGHLPPEIAGIIGKTFLFKV 403
Query: 134 K 134
+
Sbjct: 404 E 404
>Medtr8g479260.1 | replication factor-A carboxy-terminal domain
protein | LC | chr8:33777150-33779789 | 20130731
Length = 555
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 18 ATTQEKVFTILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKI 77
ATT E V+ +L TI I + + Y AC C K + + C C+ K R+ +
Sbjct: 286 ATTNE-VYVVLGTIKRIVNRENFWYTACI-CSKAVIPDSQMFYCEKCDRHVKKVFSRYCL 343
Query: 78 QLEVSDETAAAKLTLFDRDAQQLLHTTASELL-QHG---SNKEIPPVLRNLCKQTLIFEI 133
++ D T A L +FD++A L + + ++L +HG S +PP + + +T +F++
Sbjct: 344 RVRAIDHTDCATLVIFDKEATALFNKSCVDMLAEHGVAVSEGHLPPEIAGIIGKTFLFKV 403
Query: 134 K 134
+
Sbjct: 404 E 404
>Medtr2g450060.1 | replication factor-A carboxy-terminal domain
protein | LC | chr2:22081675-22078797 | 20130731
Length = 570
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 59/104 (56%), Gaps = 11/104 (10%)
Query: 39 GWSYIACHKCMKKLNKRGDQ--YMCPTCNEPAKYPTPRFKIQLEVSDETAAAKLTLFDRD 96
GW Y ACHKC K +GD+ Y C + + R+K++++VS E+ ++DR+
Sbjct: 309 GWYYFACHKCPKI--AKGDKPPYTCEDGHN-TEIEIVRYKLEMDVSYESDRCNFVVWDRE 365
Query: 97 AQQLLHTTASEL----LQHG-SNK-EIPPVLRNLCKQTLIFEIK 134
Q+L +A++L +Q G +N+ E P +L L ++ +F++K
Sbjct: 366 VTQMLGISAAQLRSNMIQAGITNRLEYPMLLDRLAEKNFVFKVK 409
>Medtr8g104590.1 | replication factor-A carboxy-terminal domain
protein | LC | chr8:44073682-44072607 | 20130731
Length = 190
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 26 TILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKIQLEVSDET 85
T+LAT+ +I+ W + +C +C + + C C K PRFK+ L V DET
Sbjct: 23 TVLATVCEIETGVEWFFHSCTQCASLVTVVDGKLSCKEC----KSAIPRFKLHLIVMDET 78
Query: 86 AAAKLTLFDRDAQQLLHTTASELLQHGS 113
+ + LFDR + +L+ GS
Sbjct: 79 GSTTIVLFDRIVTYFIGRNVQDLISEGS 106
>Medtr4g046077.1 | replication factor-A carboxy-terminal domain
protein | LC | chr4:16158485-16160769 | 20130731
Length = 405
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 9 PNKMAMKWVATTQEKVFTILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPA 68
P K + T ++ F + AT N D Y AC KC + + + Y C C +
Sbjct: 157 PKKTLAQLHDTPEDGTFVVYATFNGFVDGEDCWYPAC-KCHRSVAPDSEAYYCKGCVKNV 215
Query: 69 KYPTPRFKIQLEVSDETAAAKLTLFDRDAQQLLHTTASELL 109
PR+++++ VSD T+ A +F D Q +L+ + S L+
Sbjct: 216 FQMVPRYRVKINVSDATSVAVFVMFAGDVQNILNLSCSSLV 256
>Medtr6g051890.1 | replication factor-A carboxy-terminal domain
protein | HC | chr6:18071124-18068908 | 20130731
Length = 399
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Query: 9 PNKMAMKWVATTQEKVFTILATINDIDDTFGWSYIACHKCMKKLNKRGDQYMCPTCNEPA 68
P K + T+++ +F + ++ + + W Y AC C + L Y C C E
Sbjct: 188 PQKTIAELQGTSKDGLFVVSGIVDGLVEDEEWYYPAC-TCHRSLMPDYGAYYCKDCAEHV 246
Query: 69 KYPTPRFKIQLEVSDETAAAKLTLFDRDAQQLLHTTASELLQHGSNKEIPPV 120
+ PR K+ + V+D T A LFD D ++ A E+ GS+ P V
Sbjct: 247 FHMVPRCKVNIHVTDGTDEAVFVLFDYDVKR-SSVVAGEIQNLGSHSVTPTV 297
>Medtr4g085760.1 | replication factor-A carboxy-terminal domain
protein | LC | chr4:33538359-33540924 | 20130731
Length = 545
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 39 GWSYIACHKCMKKLNKRGDQYMCPTCNEPAKYPTPRFKIQLEVSDETAAAKLTLFDRDAQ 98
GW+Y C++C + + GD++MC ++ + P PR+K+++ + + +D +
Sbjct: 313 GWTYDGCNQCTRSVKLEGDKWMCYHKHKNDE-PLPRYKVEVTAVHKEEKIRFIFWDDLSA 371
Query: 99 QLLHTTASELLQ------HGSNKEIPPVLRNLCKQTLIFEIK 134
+L +A+EL + H + + P L L ++ +F+IK
Sbjct: 372 SILKISAAELRKKMVRAGHTNPRTYPKTLDKLLQKKKVFKIK 413