Miyakogusa Predicted Gene
- Lj6g3v1078040.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1078040.2 tr|G7ID06|G7ID06_MEDTR Serine decarboxylase
OS=Medicago truncatula GN=MTR_1g099050 PE=3
SV=1,64.76,0,Pyridoxal_deC,Pyridoxal phosphate-dependent
decarboxylase; PLP-dependent transferases,Pyridoxal phos,CUFF.59027.2
(309 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g099050.1 | serine decarboxylase | HC | chr1:44671386-4466... 397 e-111
Medtr1g099020.1 | serine decarboxylase | HC | chr1:44644069-4463... 385 e-107
Medtr4g076700.1 | serine decarboxylase | HC | chr4:29339498-2934... 365 e-101
Medtr1g099040.1 | serine decarboxylase | HC | chr1:44662804-4465... 362 e-100
Medtr1g099085.1 | serine decarboxylase | HC | chr1:44685227-4468... 357 9e-99
Medtr2g008120.1 | serine decarboxylase | HC | chr2:1306500-13009... 319 2e-87
Medtr4g076720.1 | serine decarboxylase | HC | chr4:29352606-2935... 302 3e-82
Medtr6g071990.1 | serine decarboxylase | HC | chr6:26677333-2667... 154 8e-38
Medtr4g076750.1 | serine decarboxylase | HC | chr4:29356786-2935... 68 1e-11
Medtr6g071985.1 | serine decarboxylase | HC | chr6:26673443-2667... 59 7e-09
>Medtr1g099050.1 | serine decarboxylase | HC |
chr1:44671386-44668254 | 20130731
Length = 432
Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust.
Identities = 189/291 (64%), Positives = 224/291 (76%), Gaps = 1/291 (0%)
Query: 18 LHKEVPKNNMPSAGTEKNWEIQENE-GHMNLNITKCFGESRTNLSKTIAKYVVKLNQNKS 76
+ V K+N S +K +IQEN GHM L IT C GE+ L + I Y LNQ S
Sbjct: 1 MENSVKKSNEHSGEEDKERDIQENNNGHMCLAITNCNGETHAKLDEIITHYEGTLNQKIS 60
Query: 77 QCLGFPVNQEFNYDALTPLLHYHLNNASDPFLGSGYGQNSVEFEVCVLDWFAKLWQMEKG 136
LG+P NQ F+YDAL PLLH+H+NNA DPF+GS YG NS +FE+ VLDWFAKLW+++KG
Sbjct: 61 HFLGYPTNQNFDYDALAPLLHFHINNAGDPFMGSSYGVNSTDFEISVLDWFAKLWEIKKG 120
Query: 137 DYWGYVTTGGTEGNLHGILMGREKFQDGILYTSENSHYSLFKIARMYRMQCVKINTLVSG 196
+YWGYVTTGGTEGNLHGIL+GREKF DGILYTS++SHYS+FKIAR+YRMQC+K+ TL++G
Sbjct: 121 EYWGYVTTGGTEGNLHGILIGREKFPDGILYTSQDSHYSIFKIARIYRMQCIKVGTLING 180
Query: 197 GIXXXXXXXXXXXXXXXXXIINLNIGTIMKGAIDNIDLVIETLEECGFPQDRFYIHCDGA 256
I IINLNIG+ MKGAIDNID+VIETLEE GFP+DRFYIHCDGA
Sbjct: 181 EIDCADLKTLLLAHKDKPAIINLNIGSTMKGAIDNIDMVIETLEERGFPRDRFYIHCDGA 240
Query: 257 LSGIMLPFLKRAPRINFKKPIGSISISGHKFLGCPIPCGVILTRSEHVNAL 307
L G+MLPFL++AP I FKK IGSI+ISGHKFLGCPIPCGV+LTR EH+N L
Sbjct: 241 LFGMMLPFLEQAPSITFKKSIGSITISGHKFLGCPIPCGVLLTRLEHINTL 291
>Medtr1g099020.1 | serine decarboxylase | HC |
chr1:44644069-44639757 | 20130731
Length = 453
Score = 385 bits (990), Expect = e-107, Method: Compositional matrix adjust.
Identities = 183/283 (64%), Positives = 219/283 (77%), Gaps = 3/283 (1%)
Query: 28 PSAGTEKNWEIQE--NEGH-MNLNITKCFGESRTNLSKTIAKYVVKLNQNKSQCLGFPVN 84
PS +K+ +IQE N GH MNL IT C GES+ L++ I Y LNQ S LG+P N
Sbjct: 23 PSREKDKDCKIQEENNNGHNMNLAITNCTGESQGKLAEVINHYAGTLNQEISHLLGYPTN 82
Query: 85 QEFNYDALTPLLHYHLNNASDPFLGSGYGQNSVEFEVCVLDWFAKLWQMEKGDYWGYVTT 144
Q F+Y AL PLLH+H+NN DPF+GS YG NS FEV VLDWFAKLW+++K +YWGY+T+
Sbjct: 83 QSFDYSALAPLLHFHINNVGDPFMGSSYGVNSANFEVSVLDWFAKLWEIKKEEYWGYITS 142
Query: 145 GGTEGNLHGILMGREKFQDGILYTSENSHYSLFKIARMYRMQCVKINTLVSGGIXXXXXX 204
GGTEGN HGIL+GREKF DGI+YTS++SHYS+FKIARMYRM+C+K++TLV+G I
Sbjct: 143 GGTEGNFHGILLGREKFSDGIIYTSQDSHYSIFKIARMYRMKCMKVSTLVTGEIDCANLK 202
Query: 205 XXXXXXXXXXXIINLNIGTIMKGAIDNIDLVIETLEECGFPQDRFYIHCDGALSGIMLPF 264
IINLNIGT +KGAIDNID+VI+TLEE GF +DRFYIHCDGAL G+MLP
Sbjct: 203 TLLLAHKDKPAIINLNIGTTVKGAIDNIDIVIQTLEESGFSRDRFYIHCDGALFGMMLPL 262
Query: 265 LKRAPRINFKKPIGSISISGHKFLGCPIPCGVILTRSEHVNAL 307
LK+AP I FKKPIGSI+ISGHKFLGCPIPCGV+LTR EH+N L
Sbjct: 263 LKQAPSITFKKPIGSITISGHKFLGCPIPCGVLLTRLEHINTL 305
>Medtr4g076700.1 | serine decarboxylase | HC |
chr4:29339498-29342038 | 20130731
Length = 452
Score = 365 bits (936), Expect = e-101, Method: Compositional matrix adjust.
Identities = 170/284 (59%), Positives = 216/284 (76%), Gaps = 2/284 (0%)
Query: 26 NMPSAGTEKNWEIQENEGH--MNLNITKCFGESRTNLSKTIAKYVVKLNQNKSQCLGFPV 83
N +G E++ I E + + N+ IT+C GE+ NL I YV +N+ + LG+P
Sbjct: 16 NAKLSGEERHANIHEEDINRLTNIAITQCIGETDANLDAVITHYVETINKYNLRNLGYPT 75
Query: 84 NQEFNYDALTPLLHYHLNNASDPFLGSGYGQNSVEFEVCVLDWFAKLWQMEKGDYWGYVT 143
NQ+FNY+AL PLL +HLNNA DPFLGS + NS+ FEV VLDWFAKLW++EK YWGY+T
Sbjct: 76 NQDFNYEALAPLLQFHLNNAGDPFLGSSFSLNSMTFEVSVLDWFAKLWEIEKDQYWGYIT 135
Query: 144 TGGTEGNLHGILMGREKFQDGILYTSENSHYSLFKIARMYRMQCVKINTLVSGGIXXXXX 203
TGGTEGNLHGIL+ RE+F DGILYTS++SHYS+FKIARMYRMQCVK+ +L+SG I
Sbjct: 136 TGGTEGNLHGILVAREQFPDGILYTSQDSHYSIFKIARMYRMQCVKVGSLLSGEIDCVEL 195
Query: 204 XXXXXXXXXXXXIINLNIGTIMKGAIDNIDLVIETLEECGFPQDRFYIHCDGALSGIMLP 263
IINLNIGT +KG ID++DLVI+TL++CGF +D+FYIHCDGAL GIMLP
Sbjct: 196 EASLLSHKDKPAIINLNIGTTLKGGIDDLDLVIQTLDKCGFTRDQFYIHCDGALFGIMLP 255
Query: 264 FLKRAPRINFKKPIGSISISGHKFLGCPIPCGVILTRSEHVNAL 307
F+ +A RI+FKKPI S++ISGHKFLGCP PCGV++TR +++NAL
Sbjct: 256 FINQALRISFKKPIDSVTISGHKFLGCPSPCGVLITRLKYINAL 299
>Medtr1g099040.1 | serine decarboxylase | HC |
chr1:44662804-44659513 | 20130731
Length = 451
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 166/265 (62%), Positives = 207/265 (78%)
Query: 43 GHMNLNITKCFGESRTNLSKTIAKYVVKLNQNKSQCLGFPVNQEFNYDALTPLLHYHLNN 102
G NL++TK GE+ NL IA Y + + + LG+P NQ+FNY+AL PLL +HLNN
Sbjct: 34 GLTNLDVTKSIGETDANLDAIIAHYAQTITKYNMRNLGYPTNQDFNYEALAPLLQFHLNN 93
Query: 103 ASDPFLGSGYGQNSVEFEVCVLDWFAKLWQMEKGDYWGYVTTGGTEGNLHGILMGREKFQ 162
A DPFLGS + NS+ FEV VLDWFAKLW++EK +YWGYVTTGGTEGNLHGIL GRE+
Sbjct: 94 AGDPFLGSSFSLNSMAFEVSVLDWFAKLWEIEKNEYWGYVTTGGTEGNLHGILAGREQLP 153
Query: 163 DGILYTSENSHYSLFKIARMYRMQCVKINTLVSGGIXXXXXXXXXXXXXXXXXIINLNIG 222
DGILYTS++SHYS+ KIA+MYRM+CVK+++L+SG I IINLNIG
Sbjct: 154 DGILYTSQDSHYSIAKIAKMYRMKCVKVDSLLSGEIDCVQLEASLLAHKDKPAIINLNIG 213
Query: 223 TIMKGAIDNIDLVIETLEECGFPQDRFYIHCDGALSGIMLPFLKRAPRINFKKPIGSISI 282
T +KG ID++DLVI+TL +CGF +DRFYIHCDGAL GIMLPF+K+APRI+FKKPI S++I
Sbjct: 214 TTLKGGIDDLDLVIQTLNKCGFTRDRFYIHCDGALFGIMLPFIKQAPRISFKKPIDSVTI 273
Query: 283 SGHKFLGCPIPCGVILTRSEHVNAL 307
SGHKFLGCP PCGV++TR +++NAL
Sbjct: 274 SGHKFLGCPSPCGVLITRLKYMNAL 298
>Medtr1g099085.1 | serine decarboxylase | HC |
chr1:44685227-44682006 | 20130731
Length = 543
Score = 357 bits (916), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 162/275 (58%), Positives = 205/275 (74%)
Query: 33 EKNWEIQENEGHMNLNITKCFGESRTNLSKTIAKYVVKLNQNKSQCLGFPVNQEFNYDAL 92
E+ + E +L I +C GE NL IA+Y +N+ + LG+P NQ+FNYD L
Sbjct: 27 ERRENVDEENRRKDLPINECMGEKDANLDAIIARYAETINKYNLRNLGYPTNQDFNYDKL 86
Query: 93 TPLLHYHLNNASDPFLGSGYGQNSVEFEVCVLDWFAKLWQMEKGDYWGYVTTGGTEGNLH 152
PL H+HLNNA DPF+GS + NS FEV VLDWFA LW ++ +YWGYVTTGG+EGNLH
Sbjct: 87 APLFHFHLNNAGDPFVGSSFSLNSSPFEVSVLDWFANLWNIDNSEYWGYVTTGGSEGNLH 146
Query: 153 GILMGREKFQDGILYTSENSHYSLFKIARMYRMQCVKINTLVSGGIXXXXXXXXXXXXXX 212
GIL+GRE+F DGILYTS+ SHYS+FKIARMYRM CVK+ +L SG I
Sbjct: 147 GILVGREQFPDGILYTSQESHYSIFKIARMYRMHCVKVGSLFSGEIDCVQLEASLLSHKD 206
Query: 213 XXXIINLNIGTIMKGAIDNIDLVIETLEECGFPQDRFYIHCDGALSGIMLPFLKRAPRIN 272
IINLNIGT MKG ID++DLVI+TL++CGF +DRFYIHCDGAL GIMLPF+K+A +++
Sbjct: 207 KPAIINLNIGTTMKGGIDDLDLVIQTLKKCGFTRDRFYIHCDGALFGIMLPFIKQALKVS 266
Query: 273 FKKPIGSISISGHKFLGCPIPCGVILTRSEHVNAL 307
FKKPIGS++ISGHKFLGCP PCGV++TR ++++A+
Sbjct: 267 FKKPIGSVTISGHKFLGCPSPCGVVITRLKYMSAI 301
>Medtr2g008120.1 | serine decarboxylase | HC | chr2:1306500-1300942
| 20130731
Length = 486
Score = 319 bits (818), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 145/254 (57%), Positives = 187/254 (73%)
Query: 54 GESRTNLSKTIAKYVVKLNQNKSQCLGFPVNQEFNYDALTPLLHYHLNNASDPFLGSGYG 113
G+ +++ +A+Y L + LG+P N +F+Y AL+ L H+ +NN DPF+ S YG
Sbjct: 85 GDRDAHMASVLARYRKSLTERTKYHLGYPYNLDFDYGALSQLQHFSINNLGDPFIESNYG 144
Query: 114 QNSVEFEVCVLDWFAKLWQMEKGDYWGYVTTGGTEGNLHGILMGREKFQDGILYTSENSH 173
+S +FEV VLDWFA+LW++EK +YWGY+T GTEGNLHGIL+GRE DGILY S SH
Sbjct: 145 VHSRQFEVGVLDWFARLWELEKNEYWGYITNCGTEGNLHGILVGREVLPDGILYASRESH 204
Query: 174 YSLFKIARMYRMQCVKINTLVSGGIXXXXXXXXXXXXXXXXXIINLNIGTIMKGAIDNID 233
YS+FK ARMYRM+C K+ TL SG I IIN+NIGT +KGA+D++D
Sbjct: 205 YSIFKAARMYRMECEKVETLNSGEIDCDDFKAKLLRHQDKPAIINVNIGTTVKGAVDDLD 264
Query: 234 LVIETLEECGFPQDRFYIHCDGALSGIMLPFLKRAPRINFKKPIGSISISGHKFLGCPIP 293
LVI+ LEE GF QDRFYIH DGAL G+M+PF+KRAP++ FKKPIGS+S+SGHKF+GCP+P
Sbjct: 265 LVIQKLEEAGFSQDRFYIHVDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMP 324
Query: 294 CGVILTRSEHVNAL 307
CGV +TR EH+NAL
Sbjct: 325 CGVQITRLEHINAL 338
>Medtr4g076720.1 | serine decarboxylase | HC |
chr4:29352606-29353915 | 20130731
Length = 301
Score = 302 bits (773), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 142/232 (61%), Positives = 175/232 (75%)
Query: 46 NLNITKCFGESRTNLSKTIAKYVVKLNQNKSQCLGFPVNQEFNYDALTPLLHYHLNNASD 105
N+ IT+C GE+ NL IA YV +N+ LG+P NQ+FNY+AL PLL + LNNA D
Sbjct: 56 NIAITQCIGETDANLDAVIAHYVETINKYNLCNLGYPGNQDFNYEALAPLLQFLLNNAGD 115
Query: 106 PFLGSGYGQNSVEFEVCVLDWFAKLWQMEKGDYWGYVTTGGTEGNLHGILMGREKFQDGI 165
PFLGSG+ NS+ FEV VLDWFAKLW++EK YWGYVTTGGTEGNLH IL+ RE+F DGI
Sbjct: 116 PFLGSGFSLNSMTFEVSVLDWFAKLWEIEKDQYWGYVTTGGTEGNLHAILVAREQFPDGI 175
Query: 166 LYTSENSHYSLFKIARMYRMQCVKINTLVSGGIXXXXXXXXXXXXXXXXXIINLNIGTIM 225
LYTS++SHYS+FKIARMYRMQCVK+ +L+SG I IINLNIGT +
Sbjct: 176 LYTSQDSHYSIFKIARMYRMQCVKVGSLLSGEIDCVELEASLLSHKDKPAIINLNIGTTL 235
Query: 226 KGAIDNIDLVIETLEECGFPQDRFYIHCDGALSGIMLPFLKRAPRINFKKPI 277
KG ID++DLVI+TL++CGF +D+FYIHCDGAL GIMLPF+++ RI + K I
Sbjct: 236 KGGIDDLDLVIQTLDKCGFTRDQFYIHCDGALFGIMLPFIQQVQRIIYVKRI 287
>Medtr6g071990.1 | serine decarboxylase | HC |
chr6:26677333-26674587 | 20130731
Length = 261
Score = 154 bits (390), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 87/115 (75%)
Query: 182 MYRMQCVKINTLVSGGIXXXXXXXXXXXXXXXXXIINLNIGTIMKGAIDNIDLVIETLEE 241
MYRM+C K+ TL SG I IIN+NIGT +KGA+D++DLVI+ LEE
Sbjct: 1 MYRMECEKVETLSSGEIDCDDFKAKLLRHQDKPAIINVNIGTTVKGAVDDLDLVIQKLEE 60
Query: 242 CGFPQDRFYIHCDGALSGIMLPFLKRAPRINFKKPIGSISISGHKFLGCPIPCGV 296
GF QDRFYIH DGAL G+M+PF+KRAP++ FKKPIGS+S+SGHKF+GCP+PCG+
Sbjct: 61 AGFSQDRFYIHVDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGM 115
>Medtr4g076750.1 | serine decarboxylase | HC |
chr4:29356786-29358065 | 20130731
Length = 228
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 37/41 (90%)
Query: 267 RAPRINFKKPIGSISISGHKFLGCPIPCGVILTRSEHVNAL 307
+A RI+FKKPI S++ISGHKFLGCP PCGV++TR +++NAL
Sbjct: 35 QALRISFKKPIDSVTISGHKFLGCPFPCGVLITRLKYINAL 75
>Medtr6g071985.1 | serine decarboxylase | HC |
chr6:26673443-26672059 | 20130731
Length = 192
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 28/29 (96%)
Query: 268 APRINFKKPIGSISISGHKFLGCPIPCGV 296
AP++ FKKPIGS+S+SGHKF+GCP+PCG+
Sbjct: 18 APKVTFKKPIGSVSVSGHKFVGCPMPCGM 46