Miyakogusa Predicted Gene

Lj6g3v0215830.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0215830.1 Non Characterized Hit- tr|G3MI19|G3MI19_9ACAR
Putative uncharacterized protein (Fragment)
OS=Amblyom,37.66,2e-19,DNA_pol_E_B,DNA polymerase alpha/epsilon,
subunit B; SUBFAMILY NOT NAMED,NULL; DNA POLYMERASE 2
ALPH,CUFF.57602.1
         (157 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g085750.1 | DNA polymerase alpha subunit B | HC | chr3:388...   259   8e-70

>Medtr3g085750.1 | DNA polymerase alpha subunit B | HC |
           chr3:38804725-38799088 | 20130731
          Length = 616

 Score =  259 bits (662), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 126/156 (80%), Positives = 138/156 (88%), Gaps = 2/156 (1%)

Query: 1   MGSAARVLLVPSIRDANHDFVFPQPALDISLPDLKSQIVSLANPGLFEANEVKVGCCTMD 60
           MGSA RVLLVPSIRDANHDFVFPQPA DIS P L  QI SL NPG+FEANEVKVGCCT+D
Sbjct: 432 MGSAVRVLLVPSIRDANHDFVFPQPAFDISQPQL--QIASLTNPGIFEANEVKVGCCTLD 489

Query: 61  ILKQLSGEEISRTAADGKPVDRLSRLANHILNQQSFYPLYPPAESVPLDSSLAPEALQLS 120
           +LKQ+SGEEISR +AD KP+DRLSRLANHILNQQSFYPLYPPAESVPLD SLAPEALQL 
Sbjct: 490 VLKQISGEEISRISADRKPIDRLSRLANHILNQQSFYPLYPPAESVPLDFSLAPEALQLP 549

Query: 121 LIPDVLIIPSDIKYFVKVLSSEHEGIDHAKCVAVNP 156
           L+PDVLI+PSD+KYFVKVL +E E  +  KC+AVNP
Sbjct: 550 LVPDVLILPSDLKYFVKVLDNEGEETNRMKCIAVNP 585