Miyakogusa Predicted Gene

Lj5g3v2030810.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2030810.2 tr|B9DH81|B9DH81_ARATH AT5G51780 protein
OS=Arabidopsis thaliana GN=AT5G51780 PE=2
SV=1,37.43,3e-19,HLH,Helix-loop-helix domain; HLH, helix-loop-helix
DNA-binding domain,Helix-loop-helix domain; no de,CUFF.56477.2
         (192 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g102380.1 | transcription factor bHLH120-like protein, put...   238   3e-63
Medtr0007s0330.1 | transcription factor | HC | scaffold0007:1961...   123   1e-28
Medtr0007s0380.1 | transcription factor | HC | scaffold0007:2188...   117   4e-27
Medtr0007s0330.2 | transcription factor | HC | scaffold0007:1961...   114   7e-26
Medtr1g102370.1 | transcription factor | HC | chr1:46230813-4622...   113   1e-25
Medtr2g013920.1 | helix loop helix DNA-binding domain protein | ...    60   2e-09
Medtr2g090425.1 | helix loop helix DNA-binding domain protein | ...    47   7e-06

>Medtr1g102380.1 | transcription factor bHLH120-like protein,
           putative | HC | chr1:46235719-46236971 | 20130731
          Length = 191

 Score =  238 bits (607), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 125/190 (65%), Positives = 154/190 (81%), Gaps = 2/190 (1%)

Query: 1   MAEDKIQRIISSTSDNDEKKINRREVERQRRTQMSVLCASLRSSLPLELIKGKRSVSDLI 60
           MAED+ Q  I +TSDND+KK+ RREVE+QRR QMS+LC+SLRSSLP +LIKGKRSVSD I
Sbjct: 1   MAEDQNQHKILTTSDNDDKKMIRREVEKQRRMQMSILCSSLRSSLPFDLIKGKRSVSDHI 60

Query: 61  GEAVNHVQFLKQKINALQIKRDELKEMMVNLSFVKTETVGADHSSALGKCVSINLIPGGV 120
           GEA N+VQ LKQKIN L+IKRD++KEM+ +        + AD SS + KCV I+LIPGGV
Sbjct: 61  GEAANYVQILKQKINELEIKRDKMKEMVSSSRVETGNELSADPSSVV-KCVKIDLIPGGV 119

Query: 121 EVAVYGSGFEENSTRLSVLMQILLQEGCDVVSCVSSLVNGRIFHTIKSEVKDLTCLDLAR 180
           E+ V  SG E+ S+RLS LM+I+LQEGCDVV CV++ VNG+IFHTIKSEV+DL  L+LAR
Sbjct: 120 EI-VICSGLEDYSSRLSDLMKIILQEGCDVVHCVTNQVNGKIFHTIKSEVEDLAHLNLAR 178

Query: 181 LQHRLDQAIL 190
           LQ++LD AIL
Sbjct: 179 LQNKLDHAIL 188


>Medtr0007s0330.1 | transcription factor | HC |
           scaffold0007:196183-192795 | 20130731
          Length = 204

 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/173 (40%), Positives = 110/173 (63%), Gaps = 3/173 (1%)

Query: 17  DEKKINRREVERQRRTQMSVLCASLRSSLPLELIKGKRSVSDLIGEAVNHVQFLKQKINA 76
           + KK   +E ERQRR +MS LC +LRS LP+E IKGKRS+SD + EA++++  L+ K+  
Sbjct: 16  ENKKWMHKETERQRRQEMSNLCTNLRSLLPIEYIKGKRSISDHVNEAMHYINHLQNKVKQ 75

Query: 77  LQIKRDELKEMMVNLSFVKTETVGADHSSALGKCVSINLIPGGVEVAVYGSGFEENSTRL 136
           LQ K++EL + + NLS   T   G+  SS +   V +   PGG+E+ V    F +    L
Sbjct: 76  LQDKKEELMK-VSNLSRNVTTQNGSS-SSNIQPFVIVQPFPGGLEI-VCSYSFNKCLFPL 132

Query: 137 SVLMQILLQEGCDVVSCVSSLVNGRIFHTIKSEVKDLTCLDLARLQHRLDQAI 189
           S ++ +LL+EG +++SC S+++ GR  +TI+SE   +  +D + LQ +L +AI
Sbjct: 133 SRVLSMLLKEGLNLISCTSNMIEGRFIYTIRSEEPIMPGIDYSELQRKLTEAI 185


>Medtr0007s0380.1 | transcription factor | HC |
           scaffold0007:218856-222903 | 20130731
          Length = 239

 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 10/169 (5%)

Query: 18  EKKINRREVERQRRTQMSVLCASLRSSLPLELIKGKRSVSDLIGEAVNHVQFLKQKINAL 77
           ++KI  RE+ERQRR +M+   ASLRS LPLE IKGKRS+SD + EAVN+++ ++  IN L
Sbjct: 70  KRKIVHREIERQRRQEMATYYASLRSLLPLEFIKGKRSISDHMNEAVNYIKHMQNNINEL 129

Query: 78  QIKRDELKEMMVNLSFVKTETVGADHSSALGKCVSINLIP-GGVEVAVYGSGFEENSTRL 136
             KRDELK+    LS  K E + ++H+S      ++N+    G+    + SG  E   +L
Sbjct: 130 GTKRDELKK----LSNSKLENIESNHASC-----NLNVQQNNGILRIEFTSGLREEKLKL 180

Query: 137 SVLMQILLQEGCDVVSCVSSLVNGRIFHTIKSEVKDLTCLDLARLQHRL 185
           S L+  L +EG +V SCV++ +NGR+  ++  EV +   +D   L+ ++
Sbjct: 181 SQLLNFLAKEGFEVDSCVTTEINGRLLQSVMCEVNNSNIVDQFELRKKI 229


>Medtr0007s0330.2 | transcription factor | HC |
           scaffold0007:196156-194510 | 20130731
          Length = 163

 Score =  114 bits (284), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 100/154 (64%), Gaps = 3/154 (1%)

Query: 17  DEKKINRREVERQRRTQMSVLCASLRSSLPLELIKGKRSVSDLIGEAVNHVQFLKQKINA 76
           + KK   +E ERQRR +MS LC +LRS LP+E IKGKRS+SD + EA++++  L+ K+  
Sbjct: 4   ENKKWMHKETERQRRQEMSNLCTNLRSLLPIEYIKGKRSISDHVNEAMHYINHLQNKVKQ 63

Query: 77  LQIKRDELKEMMVNLSFVKTETVGADHSSALGKCVSINLIPGGVEVAVYGSGFEENSTRL 136
           LQ K++EL + + NLS   T   G+  SS +   V +   PGG+E+ V    F +    L
Sbjct: 64  LQDKKEELMK-VSNLSRNVTTQNGSS-SSNIQPFVIVQPFPGGLEI-VCSYSFNKCLFPL 120

Query: 137 SVLMQILLQEGCDVVSCVSSLVNGRIFHTIKSEV 170
           S ++ +LL+EG +++SC S+++ GR  +TI+SEV
Sbjct: 121 SRVLSMLLKEGLNLISCTSNMIEGRFIYTIRSEV 154


>Medtr1g102370.1 | transcription factor | HC |
           chr1:46230813-46229149 | 20130731
          Length = 244

 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 100/169 (59%), Gaps = 8/169 (4%)

Query: 17  DEKKINRREVERQRRTQMSVLCASLRSSLPLELIKGKRSVSDLIGEAVNHVQFLKQKINA 76
           D+KK+  RE+E+QRR +M+ L  SLRS LPL  IKGKRS+SD + EAVN++  LK+ +  
Sbjct: 73  DKKKMVHREIEKQRRQEMATLHTSLRSLLPLHFIKGKRSLSDQMNEAVNYINHLKKNMKE 132

Query: 77  LQIKRDELKEMMVNLSFVKTETVGADHSSALGKCVSINLIPGGVEVAVYGSGFEENSTRL 136
           L  KRDELK+ + N S      V    +      +  N    G+E++   +GF E    L
Sbjct: 133 LSYKRDELKK-LSNPSLKNKSHVSCSFT------IHKNNRTVGIEIST-KTGFIEEGAPL 184

Query: 137 SVLMQILLQEGCDVVSCVSSLVNGRIFHTIKSEVKDLTCLDLARLQHRL 185
           S  ++ L++ G DVVSC S  VNG++ H+++ EV +   +DL  L+  L
Sbjct: 185 SKFLEQLMRYGLDVVSCFSIQVNGKLLHSVQCEVINSDSVDLTELRRNL 233


>Medtr2g013920.1 | helix loop helix DNA-binding domain protein | HC
           | chr2:3826720-3828487 | 20130731
          Length = 174

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 9/167 (5%)

Query: 20  KINRREVERQRRTQMSVLCASLRSSLPLELIKGKRSVSDLIGEAVNHVQFLKQKINALQI 79
           +++R+ VER RR QM  LC  L S LP +  K   SV D + EA N+++        LQI
Sbjct: 9   RVDRKFVERNRRNQMKALCQKLNSLLPHQTSKEAISVPDQLKEATNYIK-------KLQI 61

Query: 80  KRDELKEMMVNLSFVKTETVGADHSSALG-KCVSINLIPGGVEVAVYGSGFEENSTRLSV 138
             +++KE    L  ++   V  + +  +G K   I +   G+ + V      E+    S 
Sbjct: 62  NLEKMKEKKNFLLGIQRPNVNLNRNQKMGLKSPKIKIQQIGLVLEVVLITGLESQFLFSE 121

Query: 139 LMQILLQEGCDVVSCVSSLVNGRIFHTIKSEVKDLTCLDLARLQHRL 185
             ++L +EG D+V+    +    +FH+I  +V +    + AR+  RL
Sbjct: 122 TFRVLHEEGVDIVNASYKVNEDSVFHSIHCQVGEFGN-EAARISERL 167


>Medtr2g090425.1 | helix loop helix DNA-binding domain protein | LC
           | chr2:38561453-38566915 | 20130731
          Length = 327

 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 4/152 (2%)

Query: 20  KINRREVERQRRTQMSVLCASLRSSLPLELIKG-KRSVSDLIGEAVNHVQFLKQKINALQ 78
           K+ R+ VE+ RR QM +L + L S LP    K     + D + EA+N+++ L+  I   +
Sbjct: 15  KVERKIVEKNRRNQMKILFSKLNSLLPSYNQKELALPLPDQVDEAINYIKSLEINIKLAK 74

Query: 79  IKRDELKEMMVNLSFVKTETVGADHSSALGKCVSINLIPGGVEVAVYGSGFEENSTRLSV 138
            K++ L           + + GA  S  L K + I+ I   ++V V   G +E+      
Sbjct: 75  EKKESLMGNKKRSRGGWSSSYGAKGSIELPK-IEIHEIGPTLQVIV-TCGVDEHFI-FCE 131

Query: 139 LMQILLQEGCDVVSCVSSLVNGRIFHTIKSEV 170
           +M+IL +E  DV+S  SSL    + HT+ +++
Sbjct: 132 IMRILHEENVDVISSNSSLAGDSLLHTVLAQI 163