Miyakogusa Predicted Gene

Lj5g3v1888370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1888370.1 Non Characterized Hit- tr|A3IZC0|A3IZC0_9CHRO
Putative uncharacterized protein OS=Cyanothece sp.
CCY,54.88,4e-19,YGGT,Uncharacterised protein family Ycf19,CUFF.56099.1
         (214 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g097270.1 | integral membrane protein, putative | HC | chr...   327   6e-90
Medtr3g105100.1 | YGGT family protein | HC | chr3:48456403-48454...    49   4e-06

>Medtr1g097270.1 | integral membrane protein, putative | HC |
           chr1:43870650-43872571 | 20130731
          Length = 213

 Score =  327 bits (837), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 165/215 (76%), Positives = 182/215 (84%), Gaps = 5/215 (2%)

Query: 3   MATQSYLVNLNSFHAGTRGWKPS---PTKFGFGVWRSSKYPAKTNLHRSSPVMHCCSCYT 59
           MATQSYLVNLNSFHAG  G  PS   P  F FGV++S K+P + N++ SS +  CCSCYT
Sbjct: 1   MATQSYLVNLNSFHAGITGRYPSIFKPANFRFGVYKSLKHPTRRNVNGSSRITRCCSCYT 60

Query: 60  QVGASADITTFSILDAVATQNSLYSDVDLNTLKLSVPETLHAASTDFMSGLVLADIDPAT 119
           +VGASA   TF IL+    Q  L  DVDLN LKL++PETLH  STDFM+GL+LADIDPAT
Sbjct: 61  EVGASAG-ATFPILNGATAQRCLDLDVDLNILKLNIPETLHT-STDFMTGLMLADIDPAT 118

Query: 120 AKLAIGFLGPFLSVFGFLFIIRIVMSWYPKLPVGKFPYVIAYAPTEPLLIPTRKVIPPLA 179
           AKLAIGFLGPFLS FGFLFI+RIVMSWYPKLPVGKFPYVIAYAPTEPLL+PTRKVIPPLA
Sbjct: 119 AKLAIGFLGPFLSAFGFLFIVRIVMSWYPKLPVGKFPYVIAYAPTEPLLVPTRKVIPPLA 178

Query: 180 GVDVTPVVWFGLLSFLNEILVGPQGLLVLLSQKVN 214
           GVDVTPVVWFG+LSFLNEILVGPQGLLVLLSQ+VN
Sbjct: 179 GVDVTPVVWFGMLSFLNEILVGPQGLLVLLSQQVN 213


>Medtr3g105100.1 | YGGT family protein | HC | chr3:48456403-48454215
           | 20130731
          Length = 245

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 17/91 (18%)

Query: 105 DFMSGLVLADIDPATAKLAIGFLGPFLSVFGFLFIIRIVMSWYPKLPVGKFPYVIAYAPT 164
           D ++GLV+A+            L  FLS++  L + R+V++W+P  P    P ++A   T
Sbjct: 114 DSVAGLVVAN-----------GLNNFLSLYNTLLVARLVLTWFPNAP----PAIVAPLST 158

Query: 165 --EPLLIPTRKVIPPLAGVDVTPVVWFGLLS 193
             +P L   R +IPPL G+D++P++ F +L+
Sbjct: 159 VCDPYLNVFRGLIPPLGGLDLSPILAFLVLN 189