Miyakogusa Predicted Gene

Lj5g3v1696670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1696670.1 Non Characterized Hit- tr|C5YXQ2|C5YXQ2_SORBI
Putative uncharacterized protein Sb09g019910
OS=Sorghu,46,3e-19,seg,NULL; zf-CW,Zinc finger, CW-type; FAMILY NOT
NAMED,NULL; ZF_CW,Zinc finger, CW-type,CUFF.55710.1
         (101 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g089750.1 | methyl-CpG-binding domain protein | HC | chr1:...   149   5e-37
Medtr1g089750.3 | methyl-CpG-binding domain protein | HC | chr1:...   147   2e-36
Medtr1g089750.4 | methyl-CpG-binding domain protein | HC | chr1:...   147   2e-36
Medtr1g089750.2 | methyl-CpG-binding domain protein | HC | chr1:...   147   2e-36
Medtr6g055750.1 | methyl-CpG-binding domain protein | HC | chr6:...   134   1e-32
Medtr6g027250.1 | methyl-CpG-binding domain protein | HC | chr6:...   129   9e-31
Medtr0019s0310.1 | methyl-CpG-binding domain protein | HC | scaf...   128   1e-30
Medtr6g093020.4 | methyl-CpG-binding domain protein | HC | chr6:...    83   5e-17
Medtr6g093020.1 | methyl-CpG-binding domain protein | HC | chr6:...    83   5e-17
Medtr6g093020.3 | methyl-CpG-binding domain protein | HC | chr6:...    83   5e-17
Medtr6g093020.2 | methyl-CpG-binding domain protein | HC | chr6:...    83   6e-17
Medtr3g037440.1 | methyl-CpG-binding domain protein | HC | chr3:...    77   3e-15
Medtr3g435450.1 | methyl-CpG-binding domain protein | HC | chr3:...    77   5e-15
Medtr3g435470.1 | methyl-CpG-binding domain protein | LC | chr3:...    70   3e-13
Medtr0019s0330.1 | methyl-CpG-binding domain protein | HC | scaf...    59   9e-10
Medtr0019s0270.1 | methyl-CpG-binding domain protein | LC | scaf...    59   1e-09
Medtr6g027240.1 | methyl-CpG-binding domain protein | HC | chr6:...    49   9e-07

>Medtr1g089750.1 | methyl-CpG-binding domain protein | HC |
           chr1:40167443-40169432 | 20130731
          Length = 176

 Score =  149 bits (376), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 77/83 (92%)

Query: 18  RSVLSQGSIDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSRKANCSCDDPADIE 77
           R  ++QGS+D+YAAQC  C+KWRVIDTQ+EFEEIRHK+ ++PFDCS+KAN SCDDPADIE
Sbjct: 13  RPAMTQGSVDIYAAQCKLCMKWRVIDTQEEFEEIRHKIIRDPFDCSKKANRSCDDPADIE 72

Query: 78  YDSSRTWVIDKPNLPKTPEGFKR 100
           YDSSRTWVIDKPN+PKTP+GFK+
Sbjct: 73  YDSSRTWVIDKPNIPKTPQGFKK 95


>Medtr1g089750.3 | methyl-CpG-binding domain protein | HC |
           chr1:40167447-40169432 | 20130731
          Length = 161

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 63/80 (78%), Positives = 76/80 (95%)

Query: 21  LSQGSIDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSRKANCSCDDPADIEYDS 80
           ++QGS+D+YAAQC  C+KWRVIDTQ+EFEEIRHK+ ++PFDCS+KAN SCDDPADIEYDS
Sbjct: 1   MTQGSVDIYAAQCKLCMKWRVIDTQEEFEEIRHKIIRDPFDCSKKANRSCDDPADIEYDS 60

Query: 81  SRTWVIDKPNLPKTPEGFKR 100
           SRTWVIDKPN+PKTP+GFK+
Sbjct: 61  SRTWVIDKPNIPKTPQGFKK 80


>Medtr1g089750.4 | methyl-CpG-binding domain protein | HC |
           chr1:40167447-40169432 | 20130731
          Length = 161

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 63/80 (78%), Positives = 76/80 (95%)

Query: 21  LSQGSIDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSRKANCSCDDPADIEYDS 80
           ++QGS+D+YAAQC  C+KWRVIDTQ+EFEEIRHK+ ++PFDCS+KAN SCDDPADIEYDS
Sbjct: 1   MTQGSVDIYAAQCKLCMKWRVIDTQEEFEEIRHKIIRDPFDCSKKANRSCDDPADIEYDS 60

Query: 81  SRTWVIDKPNLPKTPEGFKR 100
           SRTWVIDKPN+PKTP+GFK+
Sbjct: 61  SRTWVIDKPNIPKTPQGFKK 80


>Medtr1g089750.2 | methyl-CpG-binding domain protein | HC |
           chr1:40167447-40169432 | 20130731
          Length = 161

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 63/80 (78%), Positives = 76/80 (95%)

Query: 21  LSQGSIDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSRKANCSCDDPADIEYDS 80
           ++QGS+D+YAAQC  C+KWRVIDTQ+EFEEIRHK+ ++PFDCS+KAN SCDDPADIEYDS
Sbjct: 1   MTQGSVDIYAAQCKLCMKWRVIDTQEEFEEIRHKIIRDPFDCSKKANRSCDDPADIEYDS 60

Query: 81  SRTWVIDKPNLPKTPEGFKR 100
           SRTWVIDKPN+PKTP+GFK+
Sbjct: 61  SRTWVIDKPNIPKTPQGFKK 80


>Medtr6g055750.1 | methyl-CpG-binding domain protein | HC |
           chr6:19999785-19998456 | 20130731
          Length = 174

 Score =  134 bits (338), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 71/83 (85%), Gaps = 2/83 (2%)

Query: 18  RSVLSQGSIDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSRKANCSCDDPADIE 77
           R V+SQ   D+Y AQC  C+K+R IDTQ+EFEEI HK+ QEPFDCS+KANCSCDDPADIE
Sbjct: 13  RPVISQN--DIYVAQCKLCMKFREIDTQEEFEEILHKIKQEPFDCSKKANCSCDDPADIE 70

Query: 78  YDSSRTWVIDKPNLPKTPEGFKR 100
           YDSSRTWV  KPN+PKTP+GFKR
Sbjct: 71  YDSSRTWVKYKPNIPKTPKGFKR 93


>Medtr6g027250.1 | methyl-CpG-binding domain protein | HC |
           chr6:9288228-9287075 | 20130731
          Length = 159

 Score =  129 bits (323), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 60/84 (71%), Positives = 70/84 (83%), Gaps = 2/84 (2%)

Query: 18  RSVLSQGSIDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSRKANCSCDDPADIE 77
           R V++Q   D+Y AQC  C K+R+IDTQ+EFEEI HK+ QEPFDCS+KAN SCDDPADIE
Sbjct: 13  RHVINQK--DIYTAQCNLCKKFRLIDTQEEFEEITHKIKQEPFDCSKKANLSCDDPADIE 70

Query: 78  YDSSRTWVIDKPNLPKTPEGFKRS 101
           YDSS+TWV  KPN PKTPEGFKR+
Sbjct: 71  YDSSQTWVKYKPNNPKTPEGFKRT 94


>Medtr0019s0310.1 | methyl-CpG-binding domain protein | HC |
           scaffold0019:176904-175463 | 20130731
          Length = 174

 Score =  128 bits (321), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 68/83 (81%), Gaps = 2/83 (2%)

Query: 18  RSVLSQGSIDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSRKANCSCDDPADIE 77
           R V+SQ   D+Y AQC  C+K+R ID Q+EFEEI HK+ QEPFDCS+K NC CDDPADIE
Sbjct: 13  RPVISQN--DIYVAQCKLCMKFREIDAQEEFEEILHKIKQEPFDCSKKDNCRCDDPADIE 70

Query: 78  YDSSRTWVIDKPNLPKTPEGFKR 100
           YDSSRTWV  KPN+PKTP+GFKR
Sbjct: 71  YDSSRTWVKYKPNIPKTPKGFKR 93


>Medtr6g093020.4 | methyl-CpG-binding domain protein | HC |
           chr6:35077456-35081124 | 20130731
          Length = 303

 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 53/80 (66%), Gaps = 4/80 (5%)

Query: 25  SIDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSR----KANCSCDDPADIEYDS 80
           ++  +  QC  C KWR+I T++++EEIR  + QEPF C +    + + SCDDP DI  D 
Sbjct: 95  AVGAFTVQCANCFKWRLIPTKEKYEEIREYILQEPFVCDKAREWRPDVSCDDPEDISQDG 154

Query: 81  SRTWVIDKPNLPKTPEGFKR 100
           SR W IDKP++ + P+G++R
Sbjct: 155 SRIWAIDKPSIAQPPDGWQR 174


>Medtr6g093020.1 | methyl-CpG-binding domain protein | HC |
           chr6:35077447-35080836 | 20130731
          Length = 303

 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 53/80 (66%), Gaps = 4/80 (5%)

Query: 25  SIDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSR----KANCSCDDPADIEYDS 80
           ++  +  QC  C KWR+I T++++EEIR  + QEPF C +    + + SCDDP DI  D 
Sbjct: 95  AVGAFTVQCANCFKWRLIPTKEKYEEIREYILQEPFVCDKAREWRPDVSCDDPEDISQDG 154

Query: 81  SRTWVIDKPNLPKTPEGFKR 100
           SR W IDKP++ + P+G++R
Sbjct: 155 SRIWAIDKPSIAQPPDGWQR 174


>Medtr6g093020.3 | methyl-CpG-binding domain protein | HC |
           chr6:35077447-35080836 | 20130731
          Length = 303

 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 53/80 (66%), Gaps = 4/80 (5%)

Query: 25  SIDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSR----KANCSCDDPADIEYDS 80
           ++  +  QC  C KWR+I T++++EEIR  + QEPF C +    + + SCDDP DI  D 
Sbjct: 95  AVGAFTVQCANCFKWRLIPTKEKYEEIREYILQEPFVCDKAREWRPDVSCDDPEDISQDG 154

Query: 81  SRTWVIDKPNLPKTPEGFKR 100
           SR W IDKP++ + P+G++R
Sbjct: 155 SRIWAIDKPSIAQPPDGWQR 174


>Medtr6g093020.2 | methyl-CpG-binding domain protein | HC |
           chr6:35077456-35080185 | 20130731
          Length = 253

 Score = 82.8 bits (203), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 53/80 (66%), Gaps = 4/80 (5%)

Query: 25  SIDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSR----KANCSCDDPADIEYDS 80
           ++  +  QC  C KWR+I T++++EEIR  + QEPF C +    + + SCDDP DI  D 
Sbjct: 95  AVGAFTVQCANCFKWRLIPTKEKYEEIREYILQEPFVCDKAREWRPDVSCDDPEDISQDG 154

Query: 81  SRTWVIDKPNLPKTPEGFKR 100
           SR W IDKP++ + P+G++R
Sbjct: 155 SRIWAIDKPSIAQPPDGWQR 174


>Medtr3g037440.1 | methyl-CpG-binding domain protein | HC |
           chr3:13753232-13751809 | 20130731
          Length = 240

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 4/79 (5%)

Query: 26  IDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSR----KANCSCDDPADIEYDSS 81
           +  +A QC  C KWR+  T++++EEIR    Q PF C      + + SCDDP D+  D S
Sbjct: 62  VGAFAVQCHYCSKWRLTPTEKKYEEIREHNLQHPFVCENAREWRPDISCDDPEDVSQDDS 121

Query: 82  RTWVIDKPNLPKTPEGFKR 100
             W IDKP +P+TP+G++R
Sbjct: 122 MIWAIDKPGIPQTPDGWQR 140


>Medtr3g435450.1 | methyl-CpG-binding domain protein | HC |
           chr3:11605221-11606691 | 20130731
          Length = 305

 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 4/79 (5%)

Query: 26  IDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSR----KANCSCDDPADIEYDSS 81
           +  +  QC  C KWR+I T++++EEIR    Q PF C +    + + SCDDP D+  D++
Sbjct: 106 VGAFTVQCNSCYKWRLIPTKKKYEEIREHNLQHPFICVKAREWRPDISCDDPEDVSQDNN 165

Query: 82  RTWVIDKPNLPKTPEGFKR 100
             W IDKP +P+ P+G++R
Sbjct: 166 MIWAIDKPEIPQAPDGWQR 184


>Medtr3g435470.1 | methyl-CpG-binding domain protein | LC |
           chr3:11616000-11614537 | 20130731
          Length = 292

 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 4/79 (5%)

Query: 26  IDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSR----KANCSCDDPADIEYDSS 81
           +  +  QC  C KWR++ T++++EEIR  + Q PF C +    +   SC+ P D+  D++
Sbjct: 92  VIAFTVQCASCYKWRLVPTKEKYEEIREYILQNPFVCEKAREWRPYLSCNVPEDVSQDNN 151

Query: 82  RTWVIDKPNLPKTPEGFKR 100
             W IDK ++P+TP G++R
Sbjct: 152 LIWAIDKADIPQTPHGWQR 170


>Medtr0019s0330.1 | methyl-CpG-binding domain protein | HC |
           scaffold0019:181249-180929 | 20130731
          Length = 106

 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 25/29 (86%), Positives = 27/29 (93%)

Query: 72  DPADIEYDSSRTWVIDKPNLPKTPEGFKR 100
           DPADIEYDSSR WVI KPN+PKTP+GFKR
Sbjct: 4   DPADIEYDSSRIWVIYKPNIPKTPQGFKR 32


>Medtr0019s0270.1 | methyl-CpG-binding domain protein | LC |
           scaffold0019:163784-163199 | 20130731
          Length = 167

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 31/45 (68%)

Query: 56  SQEPFDCSRKANCSCDDPADIEYDSSRTWVIDKPNLPKTPEGFKR 100
           SQ   +     N    +PADIEYDSSR WVI KPN+PKTP+GFKR
Sbjct: 8   SQNDLNVCGLVNSKVYEPADIEYDSSRKWVIYKPNIPKTPQGFKR 52


>Medtr6g027240.1 | methyl-CpG-binding domain protein | HC |
           chr6:9279488-9279150 | 20130731
          Length = 112

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 22/29 (75%), Positives = 24/29 (82%)

Query: 73  PADIEYDSSRTWVIDKPNLPKTPEGFKRS 101
           P DIEYDSS+TWV  KPN PKTPE FKR+
Sbjct: 3   PLDIEYDSSQTWVKYKPNNPKTPESFKRT 31