Miyakogusa Predicted Gene
- Lj5g3v0586520.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0586520.1 tr|D5G958|D5G958_TUBMM Whole genome shotgun
sequence assembly, scaffold_161, strain Mel28 OS=Tuber
m,27.64,7e-19,RPA_C,Replication protein A, C-terminal;
tRNA_anti,Nucleic acid binding, OB-fold,
tRNA/helicase-type,CUFF.53304.1
(270 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g009890.1 | replication protein A 32 kDa subunit-like prot... 399 e-111
Medtr4g127950.1 | replication protein A 32 kDa subunit-like prot... 173 1e-43
Medtr4g127950.3 | replication protein A 32 kDa subunit-like prot... 162 2e-40
Medtr4g127950.2 | replication protein A 32 kDa subunit-like prot... 162 2e-40
>Medtr1g009890.1 | replication protein A 32 kDa subunit-like protein
| HC | chr1:1581516-1585760 | 20130731
Length = 272
Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/272 (70%), Positives = 227/272 (83%), Gaps = 5/272 (1%)
Query: 1 MFSVTQFDXXXXXXXX--XXXQLNDSSPAPQKGRESQGLVPVTVKQINEASQSGDEKSSF 58
MFS +QFD Q NDSSPAP K R+SQGL+PVTVKQI+EAS SGDEKS+F
Sbjct: 1 MFSNSQFDSSNAFSGGGFMSSQPNDSSPAPTKSRDSQGLIPVTVKQISEASHSGDEKSNF 60
Query: 59 VINGVELTNVTLVGMVFEKAERNTDVNFVLDDGTGRIKCRRWINDAFDTQEVEEIMNGMY 118
INGV+LTNVTLVGMV+EK ERNTDVNFVLDDGTGRIKCRRW+ND FD++E+EE++NGMY
Sbjct: 61 SINGVDLTNVTLVGMVYEKTERNTDVNFVLDDGTGRIKCRRWVNDTFDSKEMEEVLNGMY 120
Query: 119 VRVNGHLKSFQGVRQVAAFSVRPVVNFDEIPFHFIDCIHHHLRSKLKMEGTISTDPPASD 178
VRV G LKSFQGVRQ+ AFSVRPV NFDEIPFHFIDCIH+HLRSKLK+EG I++ P+S+
Sbjct: 121 VRVYGSLKSFQGVRQLVAFSVRPVTNFDEIPFHFIDCIHNHLRSKLKIEG-ITSALPSSN 179
Query: 179 SSLKTPVRNTSNGSQAPSSTPAYAQYGVDGLKDCDKLVIDYLQQHSDMSDDRGIHANELS 238
SS+ TPVRN SNGSQAPSS P Y QY DGLKD DKLV++YL++HS + + G+H +ELS
Sbjct: 180 SSMNTPVRNVSNGSQAPSSNPGYVQYSTDGLKDIDKLVLNYLEKHSHI--ETGVHVDELS 237
Query: 239 RELKLPLDKIMLSLRTLGDDGLVYSTIDDFHY 270
RELKLPLDKIML L+T ++G++YSTIDD HY
Sbjct: 238 RELKLPLDKIMLLLKTPLEEGVIYSTIDDSHY 269
>Medtr4g127950.1 | replication protein A 32 kDa subunit-like protein
| HC | chr4:53250236-53246018 | 20130731
Length = 278
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/255 (39%), Positives = 156/255 (61%), Gaps = 10/255 (3%)
Query: 20 QLNDSSPAPQKGRESQGLVPVTVKQINEASQSGDEKSSFVINGVELTNVTLVGMVFEKAE 79
Q +SS P K RESQ L+P+T+KQIN A QS D+++ I+GV + VTLVG V K+
Sbjct: 24 QGGESSLTPSKNRESQTLLPLTIKQINHALQSSDDRTGLTIDGVGVNTVTLVGRVCNKSG 83
Query: 80 RNTDVNFVLDDGTGRIKCRRWINDAFDTQEVEEIMNGMYVRVNGHLKSFQGVRQVAAFSV 139
+ T+ FVLDDGTG I+C +W+++ D VE I+NGMYVR+ G LK FQG + ++ FS+
Sbjct: 84 QITEFKFVLDDGTGTIECTKWLHEPADAMAVESILNGMYVRLYGQLKGFQG-KTLSIFSL 142
Query: 140 RPVVNFDEIPFHFIDCIHHHL-RSKLKM-EGTISTDPPASDSSLKTPVRNTSNGSQAPSS 197
RPV +F+EI HFI+CI+ HL S+L+ + +I + A +S TP + G QA +
Sbjct: 143 RPVTDFNEIASHFIECIYVHLYNSRLQYTQASIPSQQHAPNSIQITPTK----GYQAQAI 198
Query: 198 TP-AYAQYGVDGLKDCDKLVIDYLQQHSDMSDDRGIHANELSRELKLPLDK-IMLSLRTL 255
P ++ +G K +LV++YL + + G+ ++++L + LD ++ +L L
Sbjct: 199 PPNQFSGQHNNGQKSVQELVLEYLALPTIRELEGGVFCGTIAKQLGVSLDNDVIPALDLL 258
Query: 256 GDDGLVYSTIDDFHY 270
+G++Y + HY
Sbjct: 259 SGEGVIYEGLPK-HY 272
>Medtr4g127950.3 | replication protein A 32 kDa subunit-like protein
| HC | chr4:53250236-53246037 | 20130731
Length = 247
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/204 (44%), Positives = 131/204 (64%), Gaps = 8/204 (3%)
Query: 20 QLNDSSPAPQKGRESQGLVPVTVKQINEASQSGDEKSSFVINGVELTNVTLVGMVFEKAE 79
Q +SS P K RESQ L+P+T+KQIN A QS D+++ I+GV + VTLVG V K+
Sbjct: 24 QGGESSLTPSKNRESQTLLPLTIKQINHALQSSDDRTGLTIDGVGVNTVTLVGRVCNKSG 83
Query: 80 RNTDVNFVLDDGTGRIKCRRWINDAFDTQEVEEIMNGMYVRVNGHLKSFQGVRQVAAFSV 139
+ T+ FVLDDGTG I+C +W+++ D VE I+NGMYVR+ G LK FQG + ++ FS+
Sbjct: 84 QITEFKFVLDDGTGTIECTKWLHEPADAMAVESILNGMYVRLYGQLKGFQG-KTLSIFSL 142
Query: 140 RPVVNFDEIPFHFIDCIHHHL-RSKLKM-EGTISTDPPASDSSLKTPVRNTSNGSQAPSS 197
RPV +F+EI HFI+CI+ HL S+L+ + +I + A +S TP + G QA +
Sbjct: 143 RPVTDFNEIASHFIECIYVHLYNSRLQYTQASIPSQQHAPNSIQITPTK----GYQAQAI 198
Query: 198 TP-AYAQYGVDGLKDCDKLVIDYL 220
P ++ +G K +LV++YL
Sbjct: 199 PPNQFSGQHNNGQKSVQELVLEYL 222
>Medtr4g127950.2 | replication protein A 32 kDa subunit-like protein
| HC | chr4:53250236-53246037 | 20130731
Length = 247
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/204 (44%), Positives = 131/204 (64%), Gaps = 8/204 (3%)
Query: 20 QLNDSSPAPQKGRESQGLVPVTVKQINEASQSGDEKSSFVINGVELTNVTLVGMVFEKAE 79
Q +SS P K RESQ L+P+T+KQIN A QS D+++ I+GV + VTLVG V K+
Sbjct: 24 QGGESSLTPSKNRESQTLLPLTIKQINHALQSSDDRTGLTIDGVGVNTVTLVGRVCNKSG 83
Query: 80 RNTDVNFVLDDGTGRIKCRRWINDAFDTQEVEEIMNGMYVRVNGHLKSFQGVRQVAAFSV 139
+ T+ FVLDDGTG I+C +W+++ D VE I+NGMYVR+ G LK FQG + ++ FS+
Sbjct: 84 QITEFKFVLDDGTGTIECTKWLHEPADAMAVESILNGMYVRLYGQLKGFQG-KTLSIFSL 142
Query: 140 RPVVNFDEIPFHFIDCIHHHL-RSKLKM-EGTISTDPPASDSSLKTPVRNTSNGSQAPSS 197
RPV +F+EI HFI+CI+ HL S+L+ + +I + A +S TP + G QA +
Sbjct: 143 RPVTDFNEIASHFIECIYVHLYNSRLQYTQASIPSQQHAPNSIQITPTK----GYQAQAI 198
Query: 198 TP-AYAQYGVDGLKDCDKLVIDYL 220
P ++ +G K +LV++YL
Sbjct: 199 PPNQFSGQHNNGQKSVQELVLEYL 222