Miyakogusa Predicted Gene

Lj5g3v0348750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0348750.1 tr|F4WWJ6|F4WWJ6_ACREC Exonuclease 3'-5'
domain-containing protein 1 OS=Acromyrmex echinatior
GN=G5I,34.66,9e-19,DNA_pol_A_exo1,3'-5' exonuclease domain; KH_1,K
Homology domain, type 1; no description,NULL; seg,NU,CUFF.52893.1
         (340 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g016970.1 | 3'-5' exonuclease | HC | chr1:4575701-4582988 ...   543   e-155
Medtr1g016970.3 | 3'-5' exonuclease | HC | chr1:4575701-4582988 ...   543   e-155
Medtr1g016970.5 | 3'-5' exonuclease | HC | chr1:4575701-4582988 ...   486   e-137
Medtr1g016970.2 | 3'-5' exonuclease | HC | chr1:4575701-4581849 ...   416   e-116
Medtr1g016970.4 | 3'-5' exonuclease | HC | chr1:4575701-4581844 ...   257   1e-68
Medtr7g086370.2 | 3'-5' exonuclease | HC | chr7:33513450-3352415...    55   1e-07
Medtr7g086370.3 | 3'-5' exonuclease | HC | chr7:33513421-3352172...    55   1e-07
Medtr7g086370.1 | 3'-5' exonuclease | HC | chr7:33513431-3352415...    54   2e-07
Medtr4g048230.2 | 3'-5' exonuclease domain protein | HC | chr4:1...    51   2e-06
Medtr4g048230.1 | 3'-5' exonuclease domain protein | HC | chr4:1...    51   2e-06

>Medtr1g016970.1 | 3'-5' exonuclease | HC | chr1:4575701-4582988 |
           20130731
          Length = 352

 Score =  543 bits (1400), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 261/332 (78%), Positives = 295/332 (88%), Gaps = 7/332 (2%)

Query: 14  YFTHIP----HPGEKVLDDDESRVPIHIVTAASQLPVEFLEPSPEKKLVIGFDCEGVDLC 69
           + TH+P     P EKV +++E RVPIH+VT ASQLPV+FLEPSP  K+VIGFDCE VDLC
Sbjct: 22  FITHLPIAPSSPSEKV-EEEEPRVPIHVVTKASQLPVDFLEPSPHSKIVIGFDCEAVDLC 80

Query: 70  RNGELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCKRDSEALYFQFG 129
           R+G LCI+QLAFPDAIYLVDAI+GG VL++ACKPALESD++TKVIHDCKRDSEALYFQFG
Sbjct: 81  RDGALCIIQLAFPDAIYLVDAIEGGSVLIEACKPALESDYVTKVIHDCKRDSEALYFQFG 140

Query: 130 IKLNNVVDTQIAYSLIEEQEGRKT--DEYISFVGLLADPRYCGTSYLEKEEVRVLLRQDP 187
           IKLNNVVDTQIAYSL+EEQEG++   D+YIS VGLLADPRYCG S ++KEEVRVLLRQDP
Sbjct: 141 IKLNNVVDTQIAYSLLEEQEGQRRLPDDYISLVGLLADPRYCGLSNVDKEEVRVLLRQDP 200

Query: 188 KFWKYRPLSELMVRTAADDVRFLLYIYHQMMEKLNERSLWYLAVRGALYCRCFCVNSNDY 247
            FW YRPLSE M+ +AADDVRFLLYIYHQMM KL ERSLW LAVRGALYCRCFCVN+N+Y
Sbjct: 201 NFWTYRPLSEQMIHSAADDVRFLLYIYHQMMAKLTERSLWLLAVRGALYCRCFCVNNNNY 260

Query: 248 ADWPSLPPIPDKLKADGNGPEEEILSVLDIPHGKMGCVIGKKGATILYIKESCNAEIQIG 307
           ADWPSLPPIPD+LK DGNGPEEEILSVLD+P GKMGC+IGKKGA+I+ IKESCNAEI IG
Sbjct: 261 ADWPSLPPIPDELKVDGNGPEEEILSVLDVPPGKMGCIIGKKGASIMSIKESCNAEILIG 320

Query: 308 GAKGPPDKVFIMGPVKQVRKAEAMIGGRFLDI 339
           G +GP DKVFI+GPVKQV+KAEAM+ GR L I
Sbjct: 321 GPRGPADKVFIIGPVKQVKKAEAMLRGRLLYI 352


>Medtr1g016970.3 | 3'-5' exonuclease | HC | chr1:4575701-4582988 |
           20130731
          Length = 352

 Score =  543 bits (1400), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 261/332 (78%), Positives = 295/332 (88%), Gaps = 7/332 (2%)

Query: 14  YFTHIP----HPGEKVLDDDESRVPIHIVTAASQLPVEFLEPSPEKKLVIGFDCEGVDLC 69
           + TH+P     P EKV +++E RVPIH+VT ASQLPV+FLEPSP  K+VIGFDCE VDLC
Sbjct: 22  FITHLPIAPSSPSEKV-EEEEPRVPIHVVTKASQLPVDFLEPSPHSKIVIGFDCEAVDLC 80

Query: 70  RNGELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCKRDSEALYFQFG 129
           R+G LCI+QLAFPDAIYLVDAI+GG VL++ACKPALESD++TKVIHDCKRDSEALYFQFG
Sbjct: 81  RDGALCIIQLAFPDAIYLVDAIEGGSVLIEACKPALESDYVTKVIHDCKRDSEALYFQFG 140

Query: 130 IKLNNVVDTQIAYSLIEEQEGRKT--DEYISFVGLLADPRYCGTSYLEKEEVRVLLRQDP 187
           IKLNNVVDTQIAYSL+EEQEG++   D+YIS VGLLADPRYCG S ++KEEVRVLLRQDP
Sbjct: 141 IKLNNVVDTQIAYSLLEEQEGQRRLPDDYISLVGLLADPRYCGLSNVDKEEVRVLLRQDP 200

Query: 188 KFWKYRPLSELMVRTAADDVRFLLYIYHQMMEKLNERSLWYLAVRGALYCRCFCVNSNDY 247
            FW YRPLSE M+ +AADDVRFLLYIYHQMM KL ERSLW LAVRGALYCRCFCVN+N+Y
Sbjct: 201 NFWTYRPLSEQMIHSAADDVRFLLYIYHQMMAKLTERSLWLLAVRGALYCRCFCVNNNNY 260

Query: 248 ADWPSLPPIPDKLKADGNGPEEEILSVLDIPHGKMGCVIGKKGATILYIKESCNAEIQIG 307
           ADWPSLPPIPD+LK DGNGPEEEILSVLD+P GKMGC+IGKKGA+I+ IKESCNAEI IG
Sbjct: 261 ADWPSLPPIPDELKVDGNGPEEEILSVLDVPPGKMGCIIGKKGASIMSIKESCNAEILIG 320

Query: 308 GAKGPPDKVFIMGPVKQVRKAEAMIGGRFLDI 339
           G +GP DKVFI+GPVKQV+KAEAM+ GR L I
Sbjct: 321 GPRGPADKVFIIGPVKQVKKAEAMLRGRLLYI 352


>Medtr1g016970.5 | 3'-5' exonuclease | HC | chr1:4575701-4582988 |
           20130731
          Length = 314

 Score =  486 bits (1252), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 232/293 (79%), Positives = 262/293 (89%), Gaps = 7/293 (2%)

Query: 14  YFTHIP----HPGEKVLDDDESRVPIHIVTAASQLPVEFLEPSPEKKLVIGFDCEGVDLC 69
           + TH+P     P EKV +++E RVPIH+VT ASQLPV+FLEPSP  K+VIGFDCE VDLC
Sbjct: 22  FITHLPIAPSSPSEKV-EEEEPRVPIHVVTKASQLPVDFLEPSPHSKIVIGFDCEAVDLC 80

Query: 70  RNGELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCKRDSEALYFQFG 129
           R+G LCI+QLAFPDAIYLVDAI+GG VL++ACKPALESD++TKVIHDCKRDSEALYFQFG
Sbjct: 81  RDGALCIIQLAFPDAIYLVDAIEGGSVLIEACKPALESDYVTKVIHDCKRDSEALYFQFG 140

Query: 130 IKLNNVVDTQIAYSLIEEQEGRKT--DEYISFVGLLADPRYCGTSYLEKEEVRVLLRQDP 187
           IKLNNVVDTQIAYSL+EEQEG++   D+YIS VGLLADPRYCG S ++KEEVRVLLRQDP
Sbjct: 141 IKLNNVVDTQIAYSLLEEQEGQRRLPDDYISLVGLLADPRYCGLSNVDKEEVRVLLRQDP 200

Query: 188 KFWKYRPLSELMVRTAADDVRFLLYIYHQMMEKLNERSLWYLAVRGALYCRCFCVNSNDY 247
            FW YRPLSE M+ +AADDVRFLLYIYHQMM KL ERSLW LAVRGALYCRCFCVN+N+Y
Sbjct: 201 NFWTYRPLSEQMIHSAADDVRFLLYIYHQMMAKLTERSLWLLAVRGALYCRCFCVNNNNY 260

Query: 248 ADWPSLPPIPDKLKADGNGPEEEILSVLDIPHGKMGCVIGKKGATILYIKESC 300
           ADWPSLPPIPD+LK DGNGPEEEILSVLD+P GKMGC+IGKKGA+I+ IKESC
Sbjct: 261 ADWPSLPPIPDELKVDGNGPEEEILSVLDVPPGKMGCIIGKKGASIMSIKESC 313


>Medtr1g016970.2 | 3'-5' exonuclease | HC | chr1:4575701-4581849 |
           20130731
          Length = 290

 Score =  416 bits (1068), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/258 (77%), Positives = 224/258 (86%), Gaps = 7/258 (2%)

Query: 14  YFTHIP----HPGEKVLDDDESRVPIHIVTAASQLPVEFLEPSPEKKLVIGFDCEGVDLC 69
           + TH+P     P EKV +++E RVPIH+VT ASQLPV+FLEPSP  K+VIGFDCE VDLC
Sbjct: 22  FITHLPIAPSSPSEKV-EEEEPRVPIHVVTKASQLPVDFLEPSPHSKIVIGFDCEAVDLC 80

Query: 70  RNGELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCKRDSEALYFQFG 129
           R+G LCI+QLAFPDAIYLVDAI+GG VL++ACKPALESD++TKVIHDCKRDSEALYFQFG
Sbjct: 81  RDGALCIIQLAFPDAIYLVDAIEGGSVLIEACKPALESDYVTKVIHDCKRDSEALYFQFG 140

Query: 130 IKLNNVVDTQIAYSLIEEQEGRKT--DEYISFVGLLADPRYCGTSYLEKEEVRVLLRQDP 187
           IKLNNVVDTQIAYSL+EEQEG++   D+YIS VGLLADPRYCG S ++KEEVRVLLRQDP
Sbjct: 141 IKLNNVVDTQIAYSLLEEQEGQRRLPDDYISLVGLLADPRYCGLSNVDKEEVRVLLRQDP 200

Query: 188 KFWKYRPLSELMVRTAADDVRFLLYIYHQMMEKLNERSLWYLAVRGALYCRCFCVNSNDY 247
            FW YRPLSE M+ +AADDVRFLLYIYHQMM KL ERSLW LAVRGALYCRCFCVN+N+Y
Sbjct: 201 NFWTYRPLSEQMIHSAADDVRFLLYIYHQMMAKLTERSLWLLAVRGALYCRCFCVNNNNY 260

Query: 248 ADWPSLPPIPDKLKADGN 265
           ADWPSLPPIP     D N
Sbjct: 261 ADWPSLPPIPGHQNLDDN 278


>Medtr1g016970.4 | 3'-5' exonuclease | HC | chr1:4575701-4581844 |
           20130731
          Length = 217

 Score =  257 bits (657), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 125/165 (75%), Positives = 145/165 (87%), Gaps = 7/165 (4%)

Query: 14  YFTHIP----HPGEKVLDDDESRVPIHIVTAASQLPVEFLEPSPEKKLVIGFDCEGVDLC 69
           + TH+P     P EKV +++E RVPIH+VT ASQLPV+FLEPSP  K+VIGFDCE VDLC
Sbjct: 22  FITHLPIAPSSPSEKV-EEEEPRVPIHVVTKASQLPVDFLEPSPHSKIVIGFDCEAVDLC 80

Query: 70  RNGELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCKRDSEALYFQFG 129
           R+G LCI+QLAFPDAIYLVDAI+GG VL++ACKPALESD++TKVIHDCKRDSEALYFQFG
Sbjct: 81  RDGALCIIQLAFPDAIYLVDAIEGGSVLIEACKPALESDYVTKVIHDCKRDSEALYFQFG 140

Query: 130 IKLNNVVDTQIAYSLIEEQEGRKT--DEYISFVGLLADPRYCGTS 172
           IKLNNVVDTQIAYSL+EEQEG++   D+YIS VGLLADPRYCG +
Sbjct: 141 IKLNNVVDTQIAYSLLEEQEGQRRLPDDYISLVGLLADPRYCGIN 185


>Medtr7g086370.2 | 3'-5' exonuclease | HC | chr7:33513450-33524154 |
           20130731
          Length = 598

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 23/167 (13%)

Query: 65  GVDLCRN------GELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCK 118
            VDL  N      G  C+MQ++     ++VD ++  D + +  +         KV+H   
Sbjct: 232 AVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGAD 291

Query: 119 RDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKTDEYISFVGLLADPRYCGTSYLEKEE 178
           RD   L   FGI + N+ DT  A  +++ +          F G+ A+  Y          
Sbjct: 292 RDIVWLQRDFGIYICNMFDTGQASRVLKMERYSLQHLLQHFCGVTANKEYQNAD------ 345

Query: 179 VRVLLRQDPKFWKYRPLSELMVRTAADDVRFLLYIYHQMMEKLNERS 225
                      W+ RPL ++M++   +D  +LLYIY  M  KL E S
Sbjct: 346 -----------WRARPLPDVMIKYGREDTHYLLYIYDLMRIKLFELS 381


>Medtr7g086370.3 | 3'-5' exonuclease | HC | chr7:33513421-33521721 |
           20130731
          Length = 438

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 23/167 (13%)

Query: 65  GVDLCRN------GELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCK 118
            VDL  N      G  C+MQ++     ++VD ++  D + +  +         KV+H   
Sbjct: 232 AVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGAD 291

Query: 119 RDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKTDEYISFVGLLADPRYCGTSYLEKEE 178
           RD   L   FGI + N+ DT  A  +++ +          F G+ A+  Y          
Sbjct: 292 RDIVWLQRDFGIYICNMFDTGQASRVLKMERYSLQHLLQHFCGVTANKEYQNAD------ 345

Query: 179 VRVLLRQDPKFWKYRPLSELMVRTAADDVRFLLYIYHQMMEKLNERS 225
                      W+ RPL ++M++   +D  +LLYIY  M  KL E S
Sbjct: 346 -----------WRARPLPDVMIKYGREDTHYLLYIYDLMRIKLFELS 381


>Medtr7g086370.1 | 3'-5' exonuclease | HC | chr7:33513431-33524154 |
           20130731
          Length = 693

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 23/167 (13%)

Query: 65  GVDLCRN------GELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCK 118
            VDL  N      G  C+MQ++     ++VD ++  D + +  +         KV+H   
Sbjct: 232 AVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGAD 291

Query: 119 RDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKTDEYISFVGLLADPRYCGTSYLEKEE 178
           RD   L   FGI + N+ DT  A  +++ +          F G+ A+  Y          
Sbjct: 292 RDIVWLQRDFGIYICNMFDTGQASRVLKMERYSLQHLLQHFCGVTANKEYQNAD------ 345

Query: 179 VRVLLRQDPKFWKYRPLSELMVRTAADDVRFLLYIYHQMMEKLNERS 225
                      W+ RPL ++M++   +D  +LLYIY  M  KL E S
Sbjct: 346 -----------WRARPLPDVMIKYGREDTHYLLYIYDLMRIKLFELS 381


>Medtr4g048230.2 | 3'-5' exonuclease domain protein | HC |
           chr4:17080472-17072108 | 20130731
          Length = 908

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 18/148 (12%)

Query: 76  IMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCKRDSEALYFQFGIKLNNV 135
           ++Q++     YL+D I   D  M+  +P      I KV H    D   L   F I + N+
Sbjct: 154 LVQISTQQEDYLIDTIALHDS-MEILRPVFADPSICKVFHGADNDVLWLQRDFHIYVVNL 212

Query: 136 VDTQIAYSLIEEQEGRKTDEYISFVGLLADPRYCGTSYLEKEEVRVLLRQDPKFWKYRPL 195
            DT  A  ++ + +        S   LL    YCG +       ++L R+D   W+ RPL
Sbjct: 213 FDTSKACEVLSKPQK-------SLAYLLET--YCGVN-----TNKLLQRED---WRQRPL 255

Query: 196 SELMVRTAADDVRFLLYIYHQMMEKLNE 223
           S  MV  A  D  +LLYI + ++++L +
Sbjct: 256 SAEMVHYARTDAHYLLYIANCLIDELKQ 283


>Medtr4g048230.1 | 3'-5' exonuclease domain protein | HC |
           chr4:17080440-17072522 | 20130731
          Length = 930

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 18/148 (12%)

Query: 76  IMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCKRDSEALYFQFGIKLNNV 135
           ++Q++     YL+D I   D  M+  +P      I KV H    D   L   F I + N+
Sbjct: 154 LVQISTQQEDYLIDTIALHDS-MEILRPVFADPSICKVFHGADNDVLWLQRDFHIYVVNL 212

Query: 136 VDTQIAYSLIEEQEGRKTDEYISFVGLLADPRYCGTSYLEKEEVRVLLRQDPKFWKYRPL 195
            DT  A  ++ + +        S   LL    YCG +       ++L R+D   W+ RPL
Sbjct: 213 FDTSKACEVLSKPQK-------SLAYLLET--YCGVN-----TNKLLQRED---WRQRPL 255

Query: 196 SELMVRTAADDVRFLLYIYHQMMEKLNE 223
           S  MV  A  D  +LLYI + ++++L +
Sbjct: 256 SAEMVHYARTDAHYLLYIANCLIDELKQ 283