Miyakogusa Predicted Gene

Lj4g3v3113250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3113250.1 tr|B3H572|B3H572_ARATH Nucleotide excision
repair, TFIIH, subunit TTDA OS=Arabidopsis thaliana
GN=At,59.72,5e-18,Tbf5,Nucleotide excision repair, TFIIH, subunit
TTDA; no description,Nucleotide excision repair, TFI,CUFF.52333.1
         (70 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g055890.1 | nucleotide excision repair, TFIIH, subunit TTD...   141   2e-34
Medtr5g055890.2 | nucleotide excision repair, TFIIH, subunit TTD...   141   2e-34
Medtr5g055880.1 | nucleotide excision repair, TFIIH, subunit TTD...   129   7e-31
Medtr5g055890.3 | nucleotide excision repair, TFIIH, subunit TTD...   110   4e-25

>Medtr5g055890.1 | nucleotide excision repair, TFIIH, subunit TTDA
          protein | HC | chr5:23016353-23017578 | 20130731
          Length = 70

 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/70 (92%), Positives = 70/70 (100%)

Query: 1  MVNATKGVFISCDIPMAQYIINMNASMPASDKFIIHILDNTHMFVQPHVEQMIRSQMAKF 60
          MVNATKGVFISCDIPMAQYI+NMNAS+PASDKFIIHILD+THMFVQPHVEQMIRSQ+AKF
Sbjct: 1  MVNATKGVFISCDIPMAQYIVNMNASLPASDKFIIHILDSTHMFVQPHVEQMIRSQIAKF 60

Query: 61 REDNTYVKPN 70
          REDNTYVKP+
Sbjct: 61 REDNTYVKPS 70


>Medtr5g055890.2 | nucleotide excision repair, TFIIH, subunit TTDA
          protein | HC | chr5:23016353-23017578 | 20130731
          Length = 70

 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/70 (92%), Positives = 70/70 (100%)

Query: 1  MVNATKGVFISCDIPMAQYIINMNASMPASDKFIIHILDNTHMFVQPHVEQMIRSQMAKF 60
          MVNATKGVFISCDIPMAQYI+NMNAS+PASDKFIIHILD+THMFVQPHVEQMIRSQ+AKF
Sbjct: 1  MVNATKGVFISCDIPMAQYIVNMNASLPASDKFIIHILDSTHMFVQPHVEQMIRSQIAKF 60

Query: 61 REDNTYVKPN 70
          REDNTYVKP+
Sbjct: 61 REDNTYVKPS 70


>Medtr5g055880.1 | nucleotide excision repair, TFIIH, subunit TTDA
          protein | LC | chr5:23011623-23012836 | 20130731
          Length = 133

 Score =  129 bits (324), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 60/68 (88%), Positives = 64/68 (94%)

Query: 1  MVNATKGVFISCDIPMAQYIINMNASMPASDKFIIHILDNTHMFVQPHVEQMIRSQMAKF 60
          MVNATKGVFISCDIPMAQ+II MNAS P SDKFIIHILD+THMFVQPHVEQMIRSQ+AKF
Sbjct: 1  MVNATKGVFISCDIPMAQFIIKMNASFPTSDKFIIHILDSTHMFVQPHVEQMIRSQIAKF 60

Query: 61 REDNTYVK 68
          REDNTY +
Sbjct: 61 REDNTYFE 68


>Medtr5g055890.3 | nucleotide excision repair, TFIIH, subunit TTDA
          protein | HC | chr5:23017411-23017578 | 20130731
          Length = 55

 Score =  110 bits (274), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 55/55 (100%)

Query: 16 MAQYIINMNASMPASDKFIIHILDNTHMFVQPHVEQMIRSQMAKFREDNTYVKPN 70
          MAQYI+NMNAS+PASDKFIIHILD+THMFVQPHVEQMIRSQ+AKFREDNTYVKP+
Sbjct: 1  MAQYIVNMNASLPASDKFIIHILDSTHMFVQPHVEQMIRSQIAKFREDNTYVKPS 55