Miyakogusa Predicted Gene

Lj4g3v2785700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2785700.1 Non Characterized Hit- tr|I3T1G1|I3T1G1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,seg,NULL;
LSM,Ribonucleoprotein LSM domain; SMALL NUCLEAR RIBONUCLEOPROTEIN
SM,NULL; no description,,CUFF.51630.1
         (132 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g092200.1 | small nuclear ribonucleoprotein | HC | chr8:38...   210   3e-55
Medtr8g058420.1 | u6 snRNA-associated-like-Smprotein | HC | chr8...    58   2e-09
Medtr8g058537.1 | u6 snRNA-associated-like-Smprotein | HC | chr8...    58   2e-09
Medtr7g108700.1 | u6 snRNA-associated-like-Smprotein | HC | chr7...    58   2e-09
Medtr8g091620.3 | u6 snRNA-associated-like-Smprotein | HC | chr8...    58   2e-09
Medtr8g091620.2 | u6 snRNA-associated-like-Smprotein | HC | chr8...    58   2e-09
Medtr8g091620.1 | u6 snRNA-associated-like-Smprotein | HC | chr8...    58   2e-09
Medtr7g094680.1 | small nuclear ribonucleoprotein | HC | chr7:37...    54   5e-08
Medtr1g072370.1 | small nuclear ribonucleoprotein | HC | chr1:32...    54   5e-08
Medtr1g088710.1 | u6 snRNA-associated-like-Smprotein | HC | chr1...    53   7e-08

>Medtr8g092200.1 | small nuclear ribonucleoprotein | HC |
           chr8:38530552-38528326 | 20130731
          Length = 131

 Score =  210 bits (535), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 98/103 (95%), Positives = 103/103 (100%)

Query: 1   MSRSLGIPVKLLHESSGHIVSVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQL 60
           MSRSLGIPVKLLHE+SGH+V+VELKSGELYRG+MIECEDNWNCQLESITYTAKDGKTSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHVVTVELKSGELYRGNMIECEDNWNCQLESITYTAKDGKTSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARVKGKGASLGVGR 103
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAR+KGKGASLGVGR
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGR 103


>Medtr8g058420.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr8:20197505-20199390 | 20130731
          Length = 146

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 7  IPVKLLHESSGHIVSVELKSGELYRGSMIECEDNWNCQLESITYTAKDG-KTSQLEHVFI 65
          +P+ LL  + GH + VELK+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 2  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 66 RGSKVRFMVIPD 77
          RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73


>Medtr8g058537.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr8:20159925-20158080 | 20130731
          Length = 146

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 7  IPVKLLHESSGHIVSVELKSGELYRGSMIECEDNWNCQLESITYTAKDG-KTSQLEHVFI 65
          +P+ LL  + GH + VELK+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 2  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 66 RGSKVRFMVIPD 77
          RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73


>Medtr7g108700.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr7:44281904-44284914 | 20130731
          Length = 150

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 7  IPVKLLHESSGHIVSVELKSGELYRGSMIECEDNWNCQLESITYTAKDG-KTSQLEHVFI 65
          +P+ LL  + GH + VELK+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 2  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 66 RGSKVRFMVIPD 77
          RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73


>Medtr8g091620.3 | u6 snRNA-associated-like-Smprotein | HC |
          chr8:38229412-38226145 | 20130731
          Length = 150

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 7  IPVKLLHESSGHIVSVELKSGELYRGSMIECEDNWNCQLESITYTAKDG-KTSQLEHVFI 65
          +P+ LL  + GH + VELK+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 2  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 66 RGSKVRFMVIPD 77
          RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73


>Medtr8g091620.2 | u6 snRNA-associated-like-Smprotein | HC |
          chr8:38229412-38226145 | 20130731
          Length = 150

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 7  IPVKLLHESSGHIVSVELKSGELYRGSMIECEDNWNCQLESITYTAKDG-KTSQLEHVFI 65
          +P+ LL  + GH + VELK+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 2  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 66 RGSKVRFMVIPD 77
          RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73


>Medtr8g091620.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr8:38229412-38226145 | 20130731
          Length = 150

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 7  IPVKLLHESSGHIVSVELKSGELYRGSMIECEDNWNCQLESITYTAKDG-KTSQLEHVFI 65
          +P+ LL  + GH + VELK+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 2  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 66 RGSKVRFMVIPD 77
          RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73


>Medtr7g094680.1 | small nuclear ribonucleoprotein | HC |
           chr7:37778374-37781262 | 20130731
          Length = 115

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%)

Query: 9   VKLLHESSGHIVSVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGS 68
           V+ L + +   VS+ELK+G +  G++   + + N  L+++  T K      L+H+ +RG+
Sbjct: 4   VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63

Query: 69  KVRFMVIPDMLKNAPMFKRLDARVKGKGASLG 100
            +R+ ++PD L    +      RVK K  + G
Sbjct: 64  NIRYYILPDSLNLETLLVEEAPRVKPKKPTAG 95


>Medtr1g072370.1 | small nuclear ribonucleoprotein | HC |
           chr1:32124771-32120319 | 20130731
          Length = 114

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%)

Query: 9   VKLLHESSGHIVSVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGS 68
           V+ L + +   VS+ELK+G +  G++   + + N  L+++  T K      L+H+ +RG+
Sbjct: 4   VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63

Query: 69  KVRFMVIPDMLKNAPMFKRLDARVKGKGASLG 100
            +R+ ++PD L    +      RVK K  + G
Sbjct: 64  NIRYYILPDSLNLETLLVEEAPRVKPKKPTAG 95


>Medtr1g088710.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr1:39681694-39680516 | 20130731
          Length = 106

 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 7  IPVKLLHESSGHIVSVELKSGELYRGSMIECEDNWNCQLESITYTAKDG-KTSQLEHVFI 65
           P+ LL  + GH + VELK+GE Y G ++ C+   N  L  +  T+ DG +   +   +I
Sbjct: 2  FPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVFCTSNDGDRFWYMPKCYI 61

Query: 66 RGSKVRFMVIPDML 79
          RG+ ++++ +P  L
Sbjct: 62 RGNTIKYLRLPPSL 75