Miyakogusa Predicted Gene

Lj4g3v2603730.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2603730.1 tr|G7LHV2|G7LHV2_MEDTR Actin-related protein 2/3
complex subunit OS=Medicago truncatula GN=MTR_8g085,97.65,0,Arp2/3
complex subunits,NULL; ARPC4,ARP23 complex 20kDa subunit; no
description,NULL; ARP2/3 COMPLEX,CUFF.51209.1
         (170 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g085290.1 | actin-related protein 2/3 complex subunit 4 | ...   339   7e-94
Medtr8g085290.2 | actin-related protein 2/3 complex subunit 4 | ...   339   7e-94

>Medtr8g085290.1 | actin-related protein 2/3 complex subunit 4 | HC
           | chr8:35327856-35324244 | 20130731
          Length = 170

 Score =  339 bits (870), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 166/170 (97%), Positives = 169/170 (99%)

Query: 1   MGSNTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAE 60
           MGS TLRLYLTCIRNTL+AAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAE
Sbjct: 1   MGSTTLRLYLTCIRNTLDAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAE 60

Query: 61  KCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLIT 120
           KCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLIT
Sbjct: 61  KCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLIT 120

Query: 121 NYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 170
           NYHCE+MQKQKLIDFIVQFMEDI+KEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 121 NYHCEEMQKQKLIDFIVQFMEDIEKEISELKMSVNTRGRLVATEFLKQFI 170


>Medtr8g085290.2 | actin-related protein 2/3 complex subunit 4 | HC
           | chr8:35327869-35324242 | 20130731
          Length = 170

 Score =  339 bits (870), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 166/170 (97%), Positives = 169/170 (99%)

Query: 1   MGSNTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAE 60
           MGS TLRLYLTCIRNTL+AAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAE
Sbjct: 1   MGSTTLRLYLTCIRNTLDAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAE 60

Query: 61  KCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLIT 120
           KCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLIT
Sbjct: 61  KCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLIT 120

Query: 121 NYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 170
           NYHCE+MQKQKLIDFIVQFMEDI+KEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 121 NYHCEEMQKQKLIDFIVQFMEDIEKEISELKMSVNTRGRLVATEFLKQFI 170