Miyakogusa Predicted Gene

Lj4g3v2371680.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2371680.1 tr|F2E5J9|F2E5J9_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,64.71,4e-18,DUF588,Uncharacterised protein family UPF0497,
trans-membrane plant; seg,NULL; A_tha_TIGR01569: plan,CUFF.50845.1
         (190 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g118800.1 | plant integral membrane protein | HC | chr4:49...   184   3e-47
Medtr4g118810.1 | plant integral membrane protein | HC | chr4:49...    60   1e-09
Medtr7g108130.1 | plant integral membrane protein | HC | chr7:43...    59   2e-09
Medtr2g020060.1 | plant integral membrane protein | HC | chr2:66...    56   3e-08
Medtr8g089300.1 | CASP POPTRDRAFT-like protein | HC | chr8:37100...    49   3e-06

>Medtr4g118800.1 | plant integral membrane protein | HC |
           chr4:49224515-49222579 | 20130731
          Length = 187

 Score =  184 bits (468), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 99/184 (53%), Positives = 118/184 (64%)

Query: 7   TEDPEHRLSSTPIPAPAAGVDYFHFDLILRXXXXXXXXXXXXXMVTSNQTEYVPLPRPAK 66
           T DPE++ SSTP PA + GVD+  FDLILR             MVT NQT Y+P+PRPAK
Sbjct: 4   TGDPEYKSSSTPAPASSVGVDHSKFDLILRFLLFAASVASVVVMVTGNQTVYLPVPRPAK 63

Query: 67  FRYSPAFIYFVAAFSVSGLYSILTALASLSVIRKPALKTKFLLYFLFWDALILGILXXXX 126
           FRYSPAF+YFVAAFSV+GLYSI+T   SLS IRKP LKTK LL+ +FWDA++LGIL    
Sbjct: 64  FRYSPAFVYFVAAFSVAGLYSIITTFISLSAIRKPNLKTKLLLHLIFWDAVMLGILASAT 123

Query: 127 XXXXXXXXXXLKGNNHVGWHKICNVYDKYCRHXXXXXXXXXXXXXXXXXXXWLSAFSLHS 186
                     LKGN H  WHKIC++YDK+CRH                   W+SA S+HS
Sbjct: 124 GTAGSVAYLGLKGNKHTDWHKICHIYDKFCRHIGASVGVGLFGSIVTLLLIWISAHSIHS 183

Query: 187 RVPQ 190
           RVP+
Sbjct: 184 RVPK 187


>Medtr4g118810.1 | plant integral membrane protein | HC |
           chr4:49234116-49235835 | 20130731
          Length = 200

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 16/148 (10%)

Query: 22  PAAGVDYFHFDLILRXXXXXXXXXXXXXMVTSNQTEYVPL-----------PRPAKFRYS 70
           PA G      +L+LR             + T  QT  VP+              AK+ Y 
Sbjct: 27  PAGG---GSCELVLRFLGFVLTLAAAIVVGTDKQTTIVPIKVVDSLPPLNVAVSAKWHYL 83

Query: 71  PAFIYFVAAFSVSGLYSILTALASLSVIRKPALKTKFLLYFLFWDALILGILXXXXXXXX 130
            AF+YF+ A +++  Y  ++ L  L+++ +   K  +      +DAL++ +L        
Sbjct: 84  SAFVYFLVANAIACTYGAISML--LTLLNRGKSKVFWGTLITIFDALMVALLFSGNGAAT 141

Query: 131 XXXXXXLKGNNHVGWHKICNVYDKYCRH 158
                  +GN+HV W K+CNV+DKYC  
Sbjct: 142 AIGVLGYQGNSHVRWKKVCNVFDKYCHQ 169


>Medtr7g108130.1 | plant integral membrane protein | HC |
           chr7:43972040-43974109 | 20130731
          Length = 191

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 64  PAKFRYSPAFIYFVAAFSVSGLYSILTALASLSVIRKPALKTKFLLYFLFWDALILGILX 123
            AK+ Y  A ++F+   ++   Y+ ++ + S ++ R    KT  L+  L  D +I+ +L 
Sbjct: 67  TAKWEYMSAIVFFLVTNAIGCSYAAISMVVS-TIARTSGNKTALLMITLL-DLVIMALLF 124

Query: 124 XXXXXXXXXXXXXLKGNNHVGWHKICNVYDKYCRH 158
                         KGN+HV W K+CNV+D YCRH
Sbjct: 125 SANGAAGAVGVLGQKGNSHVQWMKVCNVFDAYCRH 159


>Medtr2g020060.1 | plant integral membrane protein | HC |
           chr2:6650859-6647324 | 20130731
          Length = 189

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 14/167 (8%)

Query: 32  DLILRXXXXXXXXXXXXXMVTSNQTEYVPL-----------PRPAKFRYSPAFIYFVAAF 80
            ++LR             +V   QT  VP+           P  AK++Y  A++YFV A 
Sbjct: 24  SMVLRLCALVLTLTAAVVLVADKQTTVVPVKISDSLPPLDVPVTAKWQYVSAYVYFVVAN 83

Query: 81  SVSGLYSILTALASLSVIRKPALKTKFLLYFLFWDALILGILXXXXXXXXXXXXXXLKGN 140
            ++  Y+ L+ + +L+   K  L    +      DA+++ +L               KGN
Sbjct: 84  FIAFAYATLSFVIALANGHKSKLLVTLVTLL---DAIMVALLFSGNGAAWAIGVLAEKGN 140

Query: 141 NHVGWHKICNVYDKYCRHXXXXXXXXXXXXXXXXXXXWLSAFSLHSR 187
           +HV W+K+C+V+DK+C                      L A  LH R
Sbjct: 141 SHVMWNKVCHVFDKFCNQAAAACLISLLGSIVFLSLVMLPALRLHRR 187


>Medtr8g089300.1 | CASP POPTRDRAFT-like protein | HC |
           chr8:37100964-37099766 | 20130731
          Length = 194

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 7/102 (6%)

Query: 59  VPLPRPAKFRYSPAFIYFVAAFSVSGLYS-ILTALASLSVIRKPALKTKFLLYFLF--WD 115
           + +P  AKF+++PAF+YFV    +  L++ ++ A+     I  P    K L   L   +D
Sbjct: 64  ITVPLTAKFQHTPAFVYFVVPNGIVSLHNLVMIAM----YILGPKFHNKGLQLALIAVFD 119

Query: 116 ALILGILXXXXXXXXXXXXXXLKGNNHVGWHKICNVYDKYCR 157
            + L +                 GN+H  W+KIC+ ++ YC 
Sbjct: 120 TMALALASSGDGAATAMSELGRNGNSHAKWNKICDKFESYCN 161