Miyakogusa Predicted Gene

Lj4g3v1880510.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1880510.1 tr|A9NJT6|A9NJT6_PICSI Ribosomal protein OS=Picea
sitchensis PE=3 SV=1,61.84,2e-18,rpmJ_bact: ribosomal protein
L36,Ribosomal protein L36; Q8W464_ARATH_Q8W464;,NULL;
Ribosomal_L36,Rib,CUFF.49802.1
         (99 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g114610.1 | 50S ribosomal protein L36 | HC | chr4:47137961...   144   3e-35

>Medtr4g114610.1 | 50S ribosomal protein L36 | HC |
           chr4:47137961-47142621 | 20130731
          Length = 101

 Score =  144 bits (362), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/101 (69%), Positives = 84/101 (83%), Gaps = 2/101 (1%)

Query: 1   MKVRSSMKKMCEFCMTVKRRGRVYVICSANPKHKQRQGMSTFANEGPSNPVSLEINS--A 58
           MKVRSS+KKMCE+C T+KR+GRVY++C+ANPKHKQRQGMSTFA E PS+ +S+EI+S  A
Sbjct: 1   MKVRSSVKKMCEYCRTIKRKGRVYIMCTANPKHKQRQGMSTFAYEAPSHQLSVEISSSCA 60

Query: 59  KQEIRLPLTLRLGPASIFPQWHNLSMLYGWRVGLTSILFRK 99
            QEI+   T R G ASI PQ H+LSMLYGWRVGL SIL +K
Sbjct: 61  AQEIKPLHTSRTGLASIIPQRHSLSMLYGWRVGLASILSKK 101