Miyakogusa Predicted Gene

Lj4g3v1477220.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1477220.1 Non Characterized Hit- tr|I3S7U1|I3S7U1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.15,0,no
description,NULL; NifU_N,NIF system FeS cluster assembly, NifU,
N-terminal; IRON-SULFUR CLUSTER A,CUFF.49325.1
         (162 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g077720.1 | iron-sulfur cluster assembly protein IscU | HC...   263   4e-71
Medtr3g077730.1 | iron-sulfur cluster assembly protein IscU | HC...   207   4e-54

>Medtr3g077720.1 | iron-sulfur cluster assembly protein IscU | HC |
           chr3:34952962-34954984 | 20130731
          Length = 164

 Score =  263 bits (673), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 136/166 (81%), Positives = 145/166 (87%), Gaps = 6/166 (3%)

Query: 1   MLRVSAKRV----FGTASQAIRVPARFYHERVVDHYENPRNVGSFDKNAPTVVTGLVGAP 56
           MLR++ K V    F T + AIRV  RFYHERVVDHY+NPRNVGSFDKN PTV TGLVGAP
Sbjct: 1   MLRIAKKLVQTASFETPNPAIRVLPRFYHERVVDHYDNPRNVGSFDKNDPTVGTGLVGAP 60

Query: 57  ACGDVMKLQIKIDDSTGKITDACFKTFGCGSAIASSSVATEWVKGKHMEEVLTIKNTEIA 116
           ACGDVMKLQIK+D++ GKI DA FKTFGCGSAIASSSVATEWVKGK MEEVLTIKNTEIA
Sbjct: 61  ACGDVMKLQIKVDEN-GKIIDARFKTFGCGSAIASSSVATEWVKGKQMEEVLTIKNTEIA 119

Query: 117 KHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAMAGAATTEQKAATA 162
           KHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRA A AAT + K+ATA
Sbjct: 120 KHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRASATAATGD-KSATA 164


>Medtr3g077730.1 | iron-sulfur cluster assembly protein IscU | HC |
           chr3:34956954-34958945 | 20130731
          Length = 160

 Score =  207 bits (527), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 106/132 (80%), Positives = 114/132 (86%), Gaps = 3/132 (2%)

Query: 28  VVDHYENPRNVGSFDKNAPTVVTGLVGAPACG--DVMKLQIKIDDSTGKITDACFKTFGC 85
           VVDHYE PRNVGSFDKN P V  GLVGAPACG  DVMKL IK+ ++ GKI +ACFKTFGC
Sbjct: 5   VVDHYEKPRNVGSFDKNNPDVGIGLVGAPACGEGDVMKLHIKVVEN-GKIVEACFKTFGC 63

Query: 86  GSAIASSSVATEWVKGKHMEEVLTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEA 145
           GS IASSSVATEWVK K +EEVLTIKNTEI KHL+LPPVKLHCSMLAEDAIKAAVKDYEA
Sbjct: 64  GSTIASSSVATEWVKRKTIEEVLTIKNTEIPKHLNLPPVKLHCSMLAEDAIKAAVKDYEA 123

Query: 146 KRAMAGAATTEQ 157
           KRA A AAT ++
Sbjct: 124 KRASATAATGDK 135