Miyakogusa Predicted Gene

Lj4g3v1235940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1235940.1 Non Characterized Hit- tr|I1MDW7|I1MDW7_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,66.67,2e-19,HMA_2,Heavy metal-associated domain, HMA; HMA,Heavy
metal-associated domain, HMA;
SARCOPLASMIC/ENDOP,NODE_50441_length_577_cov_46.237434.path1.1
         (69 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g116990.1 | heavy-metal-associated domain protein | HC | c...   103   5e-23
Medtr4g094232.1 | copper-transporting ATPase PAA1, putative | HC...    99   6e-22

>Medtr7g116990.1 | heavy-metal-associated domain protein | HC |
           chr7:48310645-48308630 | 20130731
          Length = 165

 Score =  103 bits (256), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/72 (69%), Positives = 61/72 (84%), Gaps = 3/72 (4%)

Query: 1   MMCEGCADNVKKLLQSRPQVSSASVNLASEIAIVYPA---SEEKTAPDWQKQLGEALAEH 57
           MMCEGCA +VKKLL+++PQV SA+VNLASEIA+V  +   S+EKTA DWQKQLGE LA H
Sbjct: 89  MMCEGCASSVKKLLETQPQVLSANVNLASEIALVSLSPLLSQEKTATDWQKQLGEKLAHH 148

Query: 58  LTNCGFSSSLQG 69
           LT CGF+S+L+G
Sbjct: 149 LTTCGFTSTLRG 160


>Medtr4g094232.1 | copper-transporting ATPase PAA1, putative | HC |
           chr4:37481203-37497840 | 20130731
          Length = 943

 Score = 99.4 bits (246), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 58/68 (85%)

Query: 1   MMCEGCADNVKKLLQSRPQVSSASVNLASEIAIVYPASEEKTAPDWQKQLGEALAEHLTN 60
           M+C GCA +VK++L+S+PQVSSASVNL +E AIV+P SE K A +WQKQLG+ LAEHLT+
Sbjct: 144 MVCGGCAASVKRILESQPQVSSASVNLTTETAIVWPVSEAKAAANWQKQLGKTLAEHLTS 203

Query: 61  CGFSSSLQ 68
           CGF+S L+
Sbjct: 204 CGFNSCLR 211