Miyakogusa Predicted Gene

Lj4g3v0450640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0450640.1 Non Characterized Hit- tr|J3MA39|J3MA39_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB05G3,45.59,9e-19,no
description,Rad21/Rec8-like protein, C-terminal; "Winged helix"
DNA-binding domain,NULL;
Rad21_Re,gene.Ljchr4_pseudomol_20120830.path1.gene1194.1
         (205 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g081260.1 | sister chromatid cohesion 1 protein, putative ...   148   3e-36
Medtr5g083120.1 | sister chromatid cohesion 1 protein, putative ...   130   6e-31

>Medtr5g081260.1 | sister chromatid cohesion 1 protein, putative |
           LC | chr5:34814109-34812230 | 20130731
          Length = 329

 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/223 (45%), Positives = 126/223 (56%), Gaps = 36/223 (16%)

Query: 3   YEDFDTRLDRQFLVPPTEKLQNNGQDTEILMDELRTNLDHGLRVPEATPQVWSGKS---- 58
           +E+FD RLD  F  P  + L  + +            L   + V E TP V S KS    
Sbjct: 120 FEEFDGRLDNLFNAPREQVLPVDKE------------LPENMPVHEDTPPVLSEKSDVFP 167

Query: 59  -GGDSIHSFPGSVSEHGLSSNSGGDKGRISKKRHSSSGNGSAGLKPVAENAKFKLARVSE 117
            GGD+ +S  G+ S+HG SS+S  + GR++KK+     N + G   V EN K        
Sbjct: 168 RGGDNTYSV-GTASDHGPSSHSDLETGRLTKKKRL---NSNGGFHTVPENEKMYADFNPR 223

Query: 118 VGD--PTPDQELLVETGPTQTQANIDHPNEKIGDSIQAHMKAHF----STPGAP------ 165
             D  PTPDQ LLVETGPTQTQ N +HP++KI +SI A +K+HF    S  GAP      
Sbjct: 224 SPDMFPTPDQVLLVETGPTQTQGNPNHPSDKITESIHAQLKSHFDTLKSVSGAPQFESLD 283

Query: 166 ---AGMTRKSAAQLFYHTLVLVTGDALRGEQKEPYGDILISRG 205
              +GMTRKSAA LFY T VL T D LR EQKEPYG+ILISRG
Sbjct: 284 VLASGMTRKSAALLFYQTCVLATRDVLRVEQKEPYGEILISRG 326


>Medtr5g083120.1 | sister chromatid cohesion 1 protein, putative |
           LC | chr5:35867520-35862679 | 20130731
          Length = 575

 Score =  130 bits (328), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 90/168 (53%), Positives = 109/168 (64%), Gaps = 19/168 (11%)

Query: 51  PQVWSGKSGGDSIHSFPGSVSEHGLSSNSGGDKGRISKKRHSSSGNGSAGLKPVAENAKF 110
           P+++ G  GGD+ +S   + SEHG SS+S  + GR +K++ SSS     GL  + EN KF
Sbjct: 411 PEIFPG--GGDNSYSV-RTASEHGHSSHSDLEGGRDTKRKRSSSRKSGGGLHGLPENEKF 467

Query: 111 KLARVSEVGDPTPDQELLVETGPTQTQANIDHPNEKIGDSIQAHMKAHFST----PGAP- 165
              R+S+   PTPDQELLVETGPT TQ N +H ++KI  SIQA MKAHF T     GAP 
Sbjct: 468 N--RLSDFA-PTPDQELLVETGPTPTQGNPNHSSDKITKSIQAQMKAHFDTHKSASGAPQ 524

Query: 166 --------AGMTRKSAAQLFYHTLVLVTGDALRGEQKEPYGDILISRG 205
                   AGMT+KSAA LFY T VL T D LR EQKEPYG+ILI RG
Sbjct: 525 FVSLDILAAGMTKKSAAILFYQTCVLATRDVLRVEQKEPYGEILIFRG 572