Miyakogusa Predicted Gene

Lj4g3v0386170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0386170.1 Non Characterized Hit- tr|G7IS69|G7IS69_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,50.89,2e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL;
COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING
2/NUR77,NU,CUFF.47059.1
         (140 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g093770.1 | p8MTCP1 | HC | chr4:37034225-37030882 | 20130731    128   2e-30
Medtr4g093770.2 | p8MTCP1 | HC | chr4:37034097-37031200 | 20130731     71   3e-13
Medtr2g009710.1 | p8MTCP1 | LC | chr2:2043989-2045293 | 20130731       71   4e-13
Medtr2g009700.1 | p8MTCP1, putative | LC | chr2:2041362-2042168 ...    59   2e-09

>Medtr4g093770.1 | p8MTCP1 | HC | chr4:37034225-37030882 | 20130731
          Length = 141

 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/94 (62%), Positives = 69/94 (73%)

Query: 46  TMAQGMALGTGSAIAHRAMDAVMGPRVVQXXXXXXXXXXXXXXXXXXXFGGDACGIHTKA 105
           T+AQGMA GTGSA+AHRA+DAV+GPR +Q                   FG DAC IH+KA
Sbjct: 47  TIAQGMAFGTGSAMAHRAVDAVVGPRTIQHEAVVNEAAAAAPAPTSSSFGSDACNIHSKA 106

Query: 106 FQDCINSYGADISKCQFYMDMLAECRKNSGSSLS 139
           FQDCIN YG +ISKCQFYMDMLAEC+KNSGS++S
Sbjct: 107 FQDCINHYGTEISKCQFYMDMLAECKKNSGSTMS 140


>Medtr4g093770.2 | p8MTCP1 | HC | chr4:37034097-37031200 | 20130731
          Length = 121

 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 40/63 (63%)

Query: 46  TMAQGMALGTGSAIAHRAMDAVMGPRVVQXXXXXXXXXXXXXXXXXXXFGGDACGIHTKA 105
           T+AQGMA GTGSA+AHRA+DAV+GPR +Q                   FG DAC IH+KA
Sbjct: 47  TIAQGMAFGTGSAMAHRAVDAVVGPRTIQHEAVVNEAAAAAPAPTSSSFGSDACNIHSKA 106

Query: 106 FQD 108
           FQD
Sbjct: 107 FQD 109


>Medtr2g009710.1 | p8MTCP1 | LC | chr2:2043989-2045293 | 20130731
          Length = 163

 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 49/94 (52%), Gaps = 7/94 (7%)

Query: 46  TMAQGMALGTG-----SAIAHRAMDAVMGPRVVQXXXXXX--XXXXXXXXXXXXXFGGDA 98
           TMA+GM +        +++  RA+DAV  PR ++                        DA
Sbjct: 66  TMAEGMRVSRSGFWGWTSMVDRAVDAVFCPRTIRNEKVVTGSPAPAPAPAPNAKSLSSDA 125

Query: 99  CGIHTKAFQDCINSYGADISKCQFYMDMLAECRK 132
           C IH+KAF DCINS   +ISKCQFY DML ECR+
Sbjct: 126 CDIHSKAFLDCINSNENEISKCQFYKDMLVECRR 159


>Medtr2g009700.1 | p8MTCP1, putative | LC | chr2:2041362-2042168 |
           20130731
          Length = 90

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 8/87 (9%)

Query: 49  QGMALGTGSAIAHRAMDAVMGPRVVQXXXXXXXXXXXXXXX--------XXXXFGGDACG 100
           +G+A  T  ++A RA+DAV GP  ++                            G DAC 
Sbjct: 2   RGVAFWTEVSVARRAVDAVFGPPTIRSETVFTETPAASPALAPVPAPAPNTQSLGSDACN 61

Query: 101 IHTKAFQDCINSYGADISKCQFYMDML 127
           IH+KAF DCINS   +ISKC   ++ L
Sbjct: 62  IHSKAFLDCINSNENEISKCHLNINSL 88