Miyakogusa Predicted Gene

Lj4g3v0281060.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0281060.1 Non Characterized Hit- tr|I3SNB2|I3SNB2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,97.7,3.00004e-41,no description,NULL; snRNP Sm
proteins,Ribonucleoprotein LSM domain, eukaryotic/archaea-type;
LSM,Ri,CUFF.46786.1
         (87 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g094600.1 | u6 snRNA-associated-like-Smprotein | HC | chr4...   175   9e-45
Medtr5g072530.1 | small nuclear ribonucleoprotein | HC | chr5:30...    48   2e-06
Medtr2g104440.1 | small nuclear ribonucleoprotein | HC | chr2:44...    48   2e-06

>Medtr4g094600.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr4:38346646-38342453 | 20130731
          Length = 87

 Score =  175 bits (443), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 86/87 (98%), Positives = 87/87 (100%)

Query: 1  MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
          MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87
          RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87


>Medtr5g072530.1 | small nuclear ribonucleoprotein | HC |
          chr5:30881816-30885244 | 20130731
          Length = 88

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 9/90 (10%)

Query: 1  MASNPSQLL---PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY 53
          MAS   Q +   P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E 
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 54 EITAEGRRITKLDQILLNGNNIAILVPGGS 83
           +  + ++   L +ILL G+NI +++  G 
Sbjct: 61 NVKKKSKKT--LGRILLKGDNITLMMNTGK 88


>Medtr2g104440.1 | small nuclear ribonucleoprotein | HC |
          chr2:44988145-44990288 | 20130731
          Length = 88

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 9/90 (10%)

Query: 1  MASNPSQLL---PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY 53
          MAS   Q +   P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E 
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 54 EITAEGRRITKLDQILLNGNNIAILVPGGS 83
           +  + ++   L +ILL G+NI +++  G 
Sbjct: 61 NVKKKSKKT--LGRILLKGDNITLMMNTGK 88