Miyakogusa Predicted Gene
- Lj3g3v3639920.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v3639920.1 Non Characterized Hit- tr|I1LP26|I1LP26_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.46889
PE,80.79,0,Eukaryotic DNA topoisomerase I, N-terminal DNA-binding
fragment,DNA topoisomerase I, DNA binding, eu,CUFF.46130.1
(898 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr0172s0010.1 | DNA topoisomerase type I | HC | scaffold0172:... 1063 0.0
Medtr1g040355.1 | DNA topoisomerase type I | HC | chr1:14913419-... 1062 0.0
Medtr3g114350.1 | DNA topoisomerase type I | HC | chr3:53404014-... 858 0.0
Medtr3g114260.1 | DNA topoisomerase type I | HC | chr3:53374992-... 822 0.0
Medtr3g114150.1 | DNA topoisomerase I | HC | chr3:53312994-53318... 722 0.0
Medtr3g114360.1 | eukaryotic DNA topoisomerase I, catalytic core... 122 2e-27
>Medtr0172s0010.1 | DNA topoisomerase type I | HC |
scaffold0172:9308-1932 | 20130731
Length = 912
Score = 1063 bits (2749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 583/936 (62%), Positives = 638/936 (68%), Gaps = 100/936 (10%)
Query: 18 EPLVFKRYTSKKSQLNSEVRKSTSQSHDGPSYRQNSDGPSSNGKTSSMQKGNIVPSAKVT 77
+P+ FKR+ +KKS L+SEV+K+TS SH G S + +D SSNG+TS PS
Sbjct: 22 QPITFKRF-AKKSPLHSEVKKATSNSHGGQSNGKITDVHSSNGQTSK-------PS---- 69
Query: 78 PPVKASVGISKASNS--LGNASSAKLPLANSKLVSSRDKPKTLSEQKMSINVKEE-KNIK 134
P+K GI+K SNS LG DKP +NVK E K I+
Sbjct: 70 -PMKPCAGIAKQSNSPSLG------------------DKPNI-------VNVKNETKPIE 103
Query: 135 NCSK--XXXXXXXXXHKPLSARLKVNSHHDNKT-SPXXXXXXXXXXXXXXXXIPLSVKIN 191
+ SK KPLS++ K+ S+HDNK +P +PLS K
Sbjct: 104 HSSKGYCEDSEDDDDDKPLSSKWKIKSNHDNKVVAPVVIKKSSQDSDDDDDDVPLSAKFL 163
Query: 192 RNSNLATSSSNYDDSDKKPISKVQKERQNGSGITIKQERASTLPVKRPIDNSNSLNSSMK 251
R N TS DKKP+SKVQKERQNGS + KQ+++STLPVKR ++N +S++SS+K
Sbjct: 164 RKPNSRTS-------DKKPVSKVQKERQNGSSTSSKQQKSSTLPVKRELENCDSVHSSVK 216
Query: 252 K-------------------------------------------PKVSDSAASTKAKQVS 268
K PKVSDSA S K KQVS
Sbjct: 217 KSKVSDSAASIKTKQVSVKCELKAKEEEDDDDDKLPISHSSVKKPKVSDSAGSIKTKQVS 276
Query: 269 GKSQPKIEXXXXXXXX-VPISQRIKNXXXXXXXXXXXXXXXXXXXXXXXXGTTX-----X 322
K + K + +PIS R K G+T
Sbjct: 277 VKCEIKAKEEEDDDDDELPISHRFKKSPKLTDKPSSTKKISTKVTKVNKSGSTSFKKQTK 336
Query: 323 XXXXXXXXXXXXXXXXXXXXXXLLPSSGDGQKKWTTLVHNGVIFPPPYQPHRVKMLYKGK 382
LLPSSGDGQKKWTTLVHNGVIFPPPYQPH VK+LYKGK
Sbjct: 337 SKQTKNKSKRSGRDSEYSISSTLLPSSGDGQKKWTTLVHNGVIFPPPYQPHGVKILYKGK 396
Query: 383 PVDLTADQEEVATMYAVMRDTDYMLKDKFKENFWNDWRKLLGKNHVIQNLKDCDFTPIYD 442
PVDLT +QEEVATMYAVMRDTDYM KDKFKENFWNDWR++LG+ HVIQNLKDCDFTPIYD
Sbjct: 397 PVDLTPEQEEVATMYAVMRDTDYMQKDKFKENFWNDWREVLGRKHVIQNLKDCDFTPIYD 456
Query: 443 WCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAIVDGVKEKVGNFRVEPPGLFRGRGEH 502
W WAIVDGVKEKVGNFRVEPPGLFRGRGEH
Sbjct: 457 WHEIEKEKKKQMTTEEKKALKEEKMKQEEKYTWAIVDGVKEKVGNFRVEPPGLFRGRGEH 516
Query: 503 PKMGKLKRRIRPSDIVINIGKDAPIPECPIPGERWKEIRHDNTVTWLAFWNDPINPKLFK 562
PKMGKLK+RI PSDI INIGKDAPIPECPIPGE WK+IRHDNTVTWL +WNDPIN KLFK
Sbjct: 517 PKMGKLKKRIHPSDITINIGKDAPIPECPIPGECWKDIRHDNTVTWLCYWNDPINSKLFK 576
Query: 563 YVFLAASSSLKGQSDKEKYEKARMLKDYIGNIRAAYTKDFTSKDITKQQIAVATYLIDKL 622
YVFLAASSSLKGQSDKEKYEKAR+LKDYI NIRAAYTKDFTSKDITKQQIAVATYLIDKL
Sbjct: 577 YVFLAASSSLKGQSDKEKYEKARLLKDYIENIRAAYTKDFTSKDITKQQIAVATYLIDKL 636
Query: 623 ALRAGNEKDDDEADTVGCCTLKVENVTREAPNKLKFNFLGKDSIKYENTVEVELPVYNAI 682
ALRAGNEKDDDEADTVGCCTLKVENVTREAPNKL FNFLGKDSIKYENTVEVELPVYNAI
Sbjct: 637 ALRAGNEKDDDEADTVGCCTLKVENVTREAPNKLMFNFLGKDSIKYENTVEVELPVYNAI 696
Query: 683 LKFQKDKKGGDDLFDMLDTSKLNAHLKELMPGLTAKVFRTFNASITLDDMLNKDTKDGDV 742
LKFQKDK G+ LFDMLDT+KLN HLKELMPGLTAKVFRTFNASITLDD LNKDTKDGDV
Sbjct: 697 LKFQKDKSPGESLFDMLDTNKLNTHLKELMPGLTAKVFRTFNASITLDDKLNKDTKDGDV 756
Query: 743 GEKIVVYQHANKQVAIICNHQRSVSKSHDTQMTRLNEKLDELQAVLKELRTDLDRARXXX 802
EKIVVY HANK+VAIICNHQRSVSKSH QMT+LNEK+DELQA LKEL+ DLDRAR
Sbjct: 757 AEKIVVYNHANKEVAIICNHQRSVSKSHSQQMTKLNEKIDELQADLKELKVDLDRARKGK 816
Query: 803 XXXXXXXXXXXXNLSSEALEKKISQTNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRI 862
NL+ EALEKKI+QTNAKIEKMQRDM+TKEDLKTVALGTSKINYLDPRI
Sbjct: 817 PPTKSSDGKSKRNLTPEALEKKITQTNAKIEKMQRDMRTKEDLKTVALGTSKINYLDPRI 876
Query: 863 TVAWCKRHEVPIEKIFNKSLLAKFTWAMDVDPDFRF 898
TVAWCKRHEVPIEK+F KSLLAKF WAMDVDPDFRF
Sbjct: 877 TVAWCKRHEVPIEKMFTKSLLAKFAWAMDVDPDFRF 912
>Medtr1g040355.1 | DNA topoisomerase type I | HC |
chr1:14913419-14924304 | 20130731
Length = 899
Score = 1062 bits (2746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/911 (61%), Positives = 644/911 (70%), Gaps = 35/911 (3%)
Query: 11 LPDNFDDE--PLVFKRYT-SKKSQLNSEVRKSTSQSHDGPSYRQNSDGPSSNGKTSSMQK 67
+ FDDE P++FKR + SK +QL+SE RKSTS SHDG S+++ D PS+NG++SS Q
Sbjct: 1 MAHEFDDEDGPVIFKRSSVSKSTQLHSETRKSTSHSHDGRSFKKTPDVPSANGQSSSSQN 60
Query: 68 GNIVPSAKVTPPVKASVGISKASNSLGNASSAKLPLANSKLVSSRDKPKTLSEQKMSINV 127
G +V +AK + V++SVGISKAS S + + P +SK S +K ++L E+K+ ++V
Sbjct: 61 GKVVSTAKASA-VESSVGISKASTSTNLKTYVRSPSGSSKFASLGNKKESLIEKKIPVHV 119
Query: 128 --KEEKNIKNCSKXXXXXXXXX---HKPLSARLKVNSHHDNKTSPXXXXXXXXXXXXXX- 181
KEE N K + PLSARLK+NS KT+P
Sbjct: 120 HAKEENNSSKHGKEESCEESEDEMDNIPLSARLKMNSDRAKKTTPVVVKKSHEDSKKTTP 179
Query: 182 -----------XXIPLSVK-INRNSNLATSSSNYDDSD-KKPISKVQKERQNGSGITIKQ 228
IPLS + + N+NL SS+N SD KKP+S VQK +Q+GS + I
Sbjct: 180 VVVKKSQEDSDDDIPLSARRLQNNNNLGKSSNNNGGSDQKKPLSNVQKGQQHGSNVGI-- 237
Query: 229 ERASTLPVKRPIDNSNSLNSSMKKPKVSDSAASTKAKQVSGKSQPKIEXXXXXXXXVPIS 288
R STLPVKRP+D ++SL+SS+KK K+SD A S KQ S KS+ K+ VP+S
Sbjct: 238 -RPSTLPVKRPLDKTDSLHSSVKKSKLSDPAPSINVKQTSVKSELKVAEEDDDDDDVPLS 296
Query: 289 QRIKNXXXXXXXXXXXXXXXXXXXXXXXXGTTXXXXXXXXXXXXXXXXXXXXXXXXLLPS 348
QR+ + L PS
Sbjct: 297 QRMNKNATSVNKSSSVKKLTNVTKVNKASAPSFKKKANFKKPGNKSEQFKSTK---LPPS 353
Query: 349 SGDGQKKWTTLVHNGVIFPPPYQPHRVKMLYKGKPVDLTADQEEVATMYAVMRDTDYMLK 408
SGDGQKKWTTLVHNG+IFPPPY+PH VKMLYKGKPV LT +QEEVAT+YAVMRDT+YM K
Sbjct: 354 SGDGQKKWTTLVHNGIIFPPPYKPHGVKMLYKGKPVTLTPEQEEVATLYAVMRDTEYMQK 413
Query: 409 DKFKENFWNDWRKLLGKNHVIQNLKDCDFTPIYDWCXXXXXXXXXXXXXXXXXXXXXXXX 468
KFKENFW DW+ +LGKNHVIQNL+DCDFTPIYDWC
Sbjct: 414 AKFKENFWTDWKVILGKNHVIQNLEDCDFTPIYDWCQIEKEKKKQMSAAEKKALKEEKMK 473
Query: 469 XXXXXXWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDIVINIGKDAPIP 528
WAIVDGVKEKVGNFR EPPGLFRGRGEHPKMGKLKRRI PSD+VINIG+DAPIP
Sbjct: 474 QEEKYMWAIVDGVKEKVGNFRAEPPGLFRGRGEHPKMGKLKRRIGPSDVVINIGRDAPIP 533
Query: 529 ECPIPGERWKEIRHDNTVTWLAFWNDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLK 588
ECPIPGE WKEIRHDNTVTWLA+WNDPIN KLFKY+FL ASSS KGQSDKEKYEKAR LK
Sbjct: 534 ECPIPGESWKEIRHDNTVTWLAYWNDPINSKLFKYIFLGASSSWKGQSDKEKYEKARALK 593
Query: 589 DYIGNIRAAYTKDFTSKDITKQQIAVATYLIDKLALRAGNEKDDDE-ADTVGCCTLKVEN 647
+YI IRAAYTKDFTSKDI KQQIAVATY IDKLALRAGNEKDDDE ADTVGCCTLKVEN
Sbjct: 594 NYIERIRAAYTKDFTSKDIKKQQIAVATYFIDKLALRAGNEKDDDEAADTVGCCTLKVEN 653
Query: 648 VTREAPNKLKFNFLGKDSIKYENTVEVELPVYNAILKFQKDKKGGDDLFDMLDTSKLNAH 707
VT E NKLKF+FLGKDSI+YENTVEVELPVYNAILKFQK KK + LFD LDT+ LN H
Sbjct: 654 VTAEGDNKLKFDFLGKDSIRYENTVEVELPVYNAILKFQKGKKPSEQLFDELDTNTLNTH 713
Query: 708 LKELMPGLTAKVFRTFNASITLDDMLNKDTKDGDVGEKIVVYQHANKQVAIICNHQRSVS 767
LKELMP LTAKVFRTFNAS TLDDMLNKDTKDGDV EK++VY ANKQVAIICNHQR+VS
Sbjct: 714 LKELMPNLTAKVFRTFNASFTLDDMLNKDTKDGDVAEKLLVYNQANKQVAIICNHQRAVS 773
Query: 768 KSHDTQMTRLNEKLDELQAVLKELRTDLDRARXXXXXXXXXXXXXXXNLSSEALEKKISQ 827
KSH TQ+++LNEK+DEL+A+LKEL+TD DRA+ NL+ EA++KK+ Q
Sbjct: 774 KSHGTQISKLNEKIDELKALLKELKTDYDRAK-----KGMAPLKTKRNLAPEAIKKKMDQ 828
Query: 828 TNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFT 887
T+AKI+KM+RDM TKEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIF+K+LL KF
Sbjct: 829 TSAKIKKMERDMMTKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFSKTLLEKFA 888
Query: 888 WAMDVDPDFRF 898
WAMDVDPDFRF
Sbjct: 889 WAMDVDPDFRF 899
>Medtr3g114350.1 | DNA topoisomerase type I | HC |
chr3:53404014-53412431 | 20130731
Length = 867
Score = 858 bits (2216), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/887 (56%), Positives = 568/887 (64%), Gaps = 68/887 (7%)
Query: 1 MAVEASDKPNLPDNFDDEPLVFKRYTSKKS-QLNSEVRKSTSQSHDGPSYRQNSDGPSSN 59
MAVEASD + FK ++ KS QL SE+RKSTS SHD SY+ SD SSN
Sbjct: 1 MAVEASDGS----------VTFKSSSASKSNQLYSEMRKSTSHSHDELSYKNTSDVSSSN 50
Query: 60 GKTSSMQKGNIVPSAKVTPPVKASVGISKASNSLGNASSAKLPLANSKLVSSRDKPKTLS 119
G+TSS Q G +VPSAK + V++SVG +KAS S L + R+K
Sbjct: 51 GQTSSSQNGKVVPSAKAS-AVESSVGNTKAS--------------TSNLKTQRNKD---- 91
Query: 120 EQKMSINVKEEKNIKNCSKXXXXXXXXXHK--PLSA-RLKVNSHHDNKTSPXXXXXXXXX 176
INV EE N K PLSA ++K+N+ + K +P
Sbjct: 92 ----LINVNEENNSTKHLKEDRCEDSEEEDSIPLSAIKMKMNNGNVKKATP--DVLKKSY 145
Query: 177 XXXXXXXIPLSVKINRNSNLATSSSNYDDSDKKPISKVQKERQNGSGITIKQERASTLPV 236
IPLS + +N+NL S N+DDS+ KQE S L V
Sbjct: 146 EDSDDDDIPLSARFPKNTNLGKYSCNFDDSN-------------------KQEMTSMLSV 186
Query: 237 KRPIDNSNSLNSSMKKPKVSDSAASTKAKQVSGKSQPKIEXXXXXXXXVPISQRIKNXXX 296
KRP+D +SL+SS KK K+SD A+S AKQ + K +PIS+R
Sbjct: 187 KRPLDKIDSLHSSGKKSKLSDPASSINAKQTTMKDA--KAEEEEEDDDIPISRR-----R 239
Query: 297 XXXXXXXXXXXXXXXXXXXXXGTTXXXXXXXXXXXXXXXXXXXXXXXXLLPSSGDGQKKW 356
G S +K
Sbjct: 240 NKLVNKSSSLKKLTNVTKVNKGAAPSFKKKSKLKKSGNKSKHVKSTKLQSSSGDGQKKWT 299
Query: 357 TTLVHNGVIFPPPYQPHRVKMLYKGKPVDLTADQEEVATMYAVMRDTDYMLKDKFKENFW 416
T + + + PP Y+PH VK+LYK KPV LT +QEEVATM+AV+ D YM + FK+NFW
Sbjct: 300 TLVHNGVIFPPP-YKPHGVKVLYKAKPVTLTPEQEEVATMFAVV-DAKYMQNEIFKDNFW 357
Query: 417 NDWRKLLGKNHVIQNLKDCDFTPIYDWCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWA 476
NDWRKLLG+NHVIQNLKDCDFTPIYDWC WA
Sbjct: 358 NDWRKLLGENHVIQNLKDCDFTPIYDWCQVEKDKKKQMSSEEKKALKEQKMKQEEKYMWA 417
Query: 477 IVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDIVINIGKDAPIPECPIPGER 536
IVDGVKEKVGNFRVEPPGLF GRGEHPK+GK+KRRI PSD+ INIGK PIPECPIPGE
Sbjct: 418 IVDGVKEKVGNFRVEPPGLFIGRGEHPKIGKVKRRIHPSDVSINIGKYTPIPECPIPGES 477
Query: 537 WKEIRHDNTVTWLAFWNDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIGNIRA 596
WKEI+H +T WLA W DPINP K+V L SSSLKGQSDKEKYEKARMLK YIGNIRA
Sbjct: 478 WKEIKHKDTRIWLAKWRDPINPNKSKHVSLDPSSSLKGQSDKEKYEKARMLKSYIGNIRA 537
Query: 597 AYTKDFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREAPNKL 656
AYT+ FTSKDITKQQIAVATY IDKLALRAGNEKDD+EADTVGCCTLK+ENVT + NKL
Sbjct: 538 AYTEGFTSKDITKQQIAVATYFIDKLALRAGNEKDDEEADTVGCCTLKIENVTAQGHNKL 597
Query: 657 KFNFLGKDSIKYENTVEVELPVYNAILKFQKDKKGGDDLFDMLDTSKLNAHLKELMPGLT 716
KF+FLGKDSIKYENTVEVELPVYNAILKFQKDK GDDLFD LDTSKLNAHLKELMP LT
Sbjct: 598 KFDFLGKDSIKYENTVEVELPVYNAILKFQKDKHPGDDLFDKLDTSKLNAHLKELMPNLT 657
Query: 717 AKVFRTFNASITLDDMLNKDTKDGDVGEKIVVYQHANKQVAIICNHQRSVSKSHDTQMTR 776
AKVFRTFNAS TLDDMLNK+TKDGDV EK VYQHANKQVAIICNHQRSVSK+H Q+++
Sbjct: 658 AKVFRTFNASFTLDDMLNKETKDGDVAEKKDVYQHANKQVAIICNHQRSVSKNHSAQISK 717
Query: 777 LNEKLDELQAVLKELRTDLDRARXXXXXXXXXXXXXXXNLSSEALEKKISQTNAKIEKMQ 836
LNEK+ ELQA L+EL+ DL RAR NL+ EA+EKKI+QT+AKIEKMQ
Sbjct: 718 LNEKIVELQASLRELKIDLKRAR-KENSPLTSSDGKKRNLNPEAIEKKITQTSAKIEKMQ 776
Query: 837 RDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 883
RDM TKEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEK++ SL+
Sbjct: 777 RDMHTKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKVWTSSLV 823
>Medtr3g114260.1 | DNA topoisomerase type I | HC |
chr3:53374992-53366531 | 20130731
Length = 787
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/882 (54%), Positives = 546/882 (61%), Gaps = 100/882 (11%)
Query: 1 MAVEASDKPNLPDNFDDEPLVFKRYTSKKS-QLNSEVRKSTSQSHDGPSYRQNSDGPSSN 59
MAVEASD P + FK ++ KS QL SE+RKSTS SHD SY+ SD SSN
Sbjct: 1 MAVEASDGP----------VTFKSSSASKSNQLYSEMRKSTSHSHDERSYKNTSDVSSSN 50
Query: 60 GKTSSMQKGNIVPSAKVTPPVKASVGISKASNSLGNASSAKLPLANSKLVSSRDKPKTLS 119
G+TSS Q G +VPSAK + V++SVG +KAS S L + R+K
Sbjct: 51 GQTSSSQNGKVVPSAKASA-VESSVGNTKASTS--------------NLKTQRNKD---- 91
Query: 120 EQKMSINVKEEKNIKNCSKXXXXXXXXXHK--PLSA-RLKVNSHHDNKTSPXXXXXXXXX 176
INV EE N K PLS+ ++K+N+ + K +P
Sbjct: 92 ----LINVNEENNSTKHLKEDRCEDSEEEDSIPLSSIKMKMNNGNVKKATPDVLKKSYED 147
Query: 177 XXXXXXXIPLSVKINRNSNLATSSSNYDDSDKKPISKVQKERQNGSGITIKQERASTLPV 236
IPLS ++ +N+NL S N+DDS+K QE S L
Sbjct: 148 SDDDDDDIPLSARLPKNTNLGKSRCNFDDSNK-------------------QEMTSMLSA 188
Query: 237 KRPIDNSNSLNSSMKKPKVSDSAASTKAKQVSGKSQPKIEXXXXXXXXVPISQRIKNXXX 296
KR +D +SL+SS KK K+SD A+S AKQ + K K E +PIS+R
Sbjct: 189 KRSLDKIDSLHSSGKKSKLSDPASSINAKQKTMKCDAKAEEEEEDDD-IPISRR------ 241
Query: 297 XXXXXXXXXXXXXXXXXXXXXGTTXXXXXXXXXXXXXXXXXXXXXXXXLLPSSGDGQKKW 356
L SSGDGQKKW
Sbjct: 242 RNKLVNKSSSLKKLTNVTKVNKGAAPSFKKKSKLKKSGNKSKHVKSTKLQSSSGDGQKKW 301
Query: 357 TTLVHNGVIFPPPYQPHRVKMLYKGKPVDLTADQEEVATMYAVMRDTDYMLKDKFKENFW 416
TTLVHNGVIFPPPY+PH VK+LYKGKPV LT +QEE + M + FK+NFW
Sbjct: 302 TTLVHNGVIFPPPYKPHGVKVLYKGKPVTLTPEQEESS-----------MQNEIFKDNFW 350
Query: 417 NDWRKLLGKNHVIQNLKDCDFTPIYDWCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWA 476
NDWRKLLG+NHVIQNLKDCDFTPIYDWC W
Sbjct: 351 NDWRKLLGENHVIQNLKDCDFTPIYDWCQVEKDKKKQMSSEEKKALKEQKMKQEEKYMWV 410
Query: 477 IVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDIVINIGKDAPIPECPIPGER 536
IVDGVKEKVGNFRVEPPGLF GRGEHPK+GK+KRRI PSD+ INIGK APIPECPIPGE
Sbjct: 411 IVDGVKEKVGNFRVEPPGLFIGRGEHPKIGKVKRRIHPSDVSINIGKYAPIPECPIPGES 470
Query: 537 WKEIRHDNTVTWLAFWNDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIGNIRA 596
WKEI+H +T WLA SSLKGQSDKEKYEKARML YIGNIRA
Sbjct: 471 WKEIKHKDTRIWLA-----------------KCSSLKGQSDKEKYEKARMLNSYIGNIRA 513
Query: 597 AYTKDFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREAPNKL 656
AYTK FTSKDITKQQIAVATY IDKLALRAGNEKDD+EADTVGCCTLKVENVT + NKL
Sbjct: 514 AYTKGFTSKDITKQQIAVATYFIDKLALRAGNEKDDEEADTVGCCTLKVENVTAQGHNKL 573
Query: 657 KFNFLGKDSIKYENTVEVELPVYNAILKFQKDKKGGDDLFDMLDTS-KLNAHLKELMPGL 715
KF+FLGKDSIKYE TVEVELPVYNAILKFQK + L +NAHLKELMP L
Sbjct: 574 KFDFLGKDSIKYEYTVEVELPVYNAILKFQK-------VSAFLSYQINVNAHLKELMPNL 626
Query: 716 TAKVFRTFNASITLDDMLNKDTKDGDVGEKIVVYQHANKQVAIICNHQRSVSKSHDTQMT 775
TAKVFRTFNAS TLDDMLNK+TKDGDV EK VYQHANKQ AIICNHQRSVSK+H Q++
Sbjct: 627 TAKVFRTFNASFTLDDMLNKETKDGDVAEKRDVYQHANKQGAIICNHQRSVSKNHSAQIS 686
Query: 776 RLNEKLDELQAVLKELRTDLDRARXXXXXXXXXXXXXXXNLSSEALEKKISQTNAKIEKM 835
+LNEK+ ELQA L+EL+ DL +AR NL+ EA+EKKI+QT+AKIEKM
Sbjct: 687 KLNEKIVELQAFLRELKIDLKKAR-KEKSPLTSSDGKKRNLNPEAIEKKITQTSAKIEKM 745
Query: 836 QRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKI 877
QRDM TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEK+
Sbjct: 746 QRDMHTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKV 787
>Medtr3g114150.1 | DNA topoisomerase I | HC | chr3:53312994-53318519
| 20130731
Length = 744
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/801 (53%), Positives = 499/801 (62%), Gaps = 80/801 (9%)
Query: 1 MAVEASDKPNLPDNFDDEPLVFKRYTSKKSQLNSEVRKSTSQSHDGPSYRQNSDGPSSNG 60
MAVEAS K N F +S+ +QL+S RKSTS SHDG SY+ S+ SSN
Sbjct: 1 MAVEASGKLNTSHKF--------IRSSESNQLHSNTRKSTSHSHDGRSYKNTSNVLSSND 52
Query: 61 KTSSMQKGNIVPSAKVTPPVKASVGISKASNSLGNASSAKLPLANSKLVSSRDKPKTLSE 120
++SS Q G ++ SA + V++SVGIS AS S N K + K L E
Sbjct: 53 QSSSSQNGKVIRSA-MASAVESSVGISNASTS------------NLKTYTRSPSTKHLKE 99
Query: 121 QKMSINVKEEKNIKNCSKXXXXXXXXXHKPLSA-RLKVNSHHDNKTSPXXXXXXXXXXXX 179
+ + EE ++ PLS R+K+N+ + K +P
Sbjct: 100 DRREDSADEEDSM----------------PLSVIRMKMNNANVKKATP---NVLKKSYED 140
Query: 180 XXXXIPLSVKINRNSNLATSSSNYDDSDKKPISKVQKERQNGSGITIKQERASTLPVKRP 239
IPLS ++++ +NYDDSD KQE+ASTL VKRP
Sbjct: 141 FDDDIPLSARLSQ-------ITNYDDSD-------------------KQEKASTLSVKRP 174
Query: 240 IDNSNSLNSSMKKPKVSDSAASTKAKQVSGKSQPKIEXXXXXXXXVPISQRIKNXXXXXX 299
+D SL+SS KK K+S A+S AKQ + K K E +PIS+R+
Sbjct: 175 LDEFESLHSSGKKSKLSHPASSINAKQTTMKCDVKAE-EEEEDDDIPISRRMNKLANKSS 233
Query: 300 XXXXXXXXXXXXXXXXXXGTTXXXXXXXXXXXXXXXXXXXXXXXXLLPSSGDGQKKWTTL 359
L S +K T +
Sbjct: 234 YSKKLTNDTKVNKVD-----APSFKKKARLKKSGNKSKHVKSTKHQLSSGDGQKKWTTLV 288
Query: 360 VHNGVIFPPPYQPHRVKMLYKGKPVDLTADQEEVATMYAVMRDTDYMLKDKFKENFWNDW 419
+ + PP Y+PH VK+LYKGKPV LT +QEEVATM+AV DT Y + FK NFWNDW
Sbjct: 289 HNGVIFPPP-YKPHGVKILYKGKPVTLTPEQEEVATMFAVT-DTKYSQNEIFKVNFWNDW 346
Query: 420 RKLLGKNHVIQNLKDCDFTPIYDWCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAIVD 479
RKLLG+NH+IQNLKDCD TPIYDWC WAIVD
Sbjct: 347 RKLLGENHMIQNLKDCDITPIYDWCQIEKDKKKQMSSAEKKALKEEKMKQEEKYMWAIVD 406
Query: 480 GVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDIVINIGKDAPIPECPIPGERWKE 539
GVKEKVG+FRVEPPGLF GRGEHPK+GK+KRRI P D+ INIGK APIPECPIPGE WK
Sbjct: 407 GVKEKVGSFRVEPPGLFIGRGEHPKIGKVKRRILPHDVTINIGKYAPIPECPIPGESWK- 465
Query: 540 IRHDNTVTWLAFWNDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIGNIR-AAY 598
I H++TVTWLA W DPI+PKL KYV+L ASSSLKG+SDKEKYEKARMLK YIGNIR AAY
Sbjct: 466 ITHEDTVTWLAKWCDPIDPKLIKYVWLGASSSLKGKSDKEKYEKARMLKSYIGNIRAAAY 525
Query: 599 TKDFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREAPNKLKF 658
TK F SK ITKQQIAVATY IDKLALRAGNEKDD+EADTVGCCTLKVENVT + NKLKF
Sbjct: 526 TKGFKSKYITKQQIAVATYFIDKLALRAGNEKDDEEADTVGCCTLKVENVTAQGHNKLKF 585
Query: 659 NFLGKDSIKYENTVEVELPVYNAILKFQKDKKGGDDLFDMLDTSKLNAHLKELMPGLTAK 718
FLGKDSIKYENTVEVELPVYNAILKFQKDK GDDLFD LDTSKLNAHLKELMP LTAK
Sbjct: 586 EFLGKDSIKYENTVEVELPVYNAILKFQKDKHPGDDLFDKLDTSKLNAHLKELMPNLTAK 645
Query: 719 VFRTFNASITLDDMLNKDTKDGDVGEKIVVYQHANKQVAIICNHQRSVSKSHDTQMTRLN 778
VF TFNAS TLDDMLNK+TKDGDV EK+ V++ ANKQVAIICNHQRSVSKSH Q+++LN
Sbjct: 646 VFCTFNASFTLDDMLNKETKDGDVAEKVYVHRQANKQVAIICNHQRSVSKSHSEQISKLN 705
Query: 779 EKLDELQAVLKELRTDLDRAR 799
EK+DELQ KEL+ DL+RA+
Sbjct: 706 EKIDELQ---KELKIDLERAK 723
>Medtr3g114360.1 | eukaryotic DNA topoisomerase I, catalytic core
protein | LC | chr3:53414518-53417046 | 20130731
Length = 270
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 82/129 (63%), Gaps = 36/129 (27%)
Query: 748 VYQHANKQVAIICNHQRSVSKSHDTQMTRLNEKLDELQAVLKELRTDLDRARXXXXXXXX 807
VY +ANKQVAIICNHQ SVSK H Q+++LNEK+DELQA LK+L+ DL+R R
Sbjct: 64 VYHNANKQVAIICNHQCSVSKIHSEQISKLNEKIDELQADLKKLKIDLERDR-------- 115
Query: 808 XXXXXXXNLSSEALEKKISQTNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWC 867
+KISQT+AKI+KMQ DM TKEDLKTVAL VA C
Sbjct: 116 ---------------EKISQTSAKIKKMQHDMHTKEDLKTVAL-------------VACC 147
Query: 868 KRHEVPIEK 876
KRHEVPIEK
Sbjct: 148 KRHEVPIEK 156