Miyakogusa Predicted Gene

Lj3g3v3553980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3553980.1 CUFF.46004.1
         (194 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g075710.1 | signal recognition particle 43 kDa protein | H...   263   1e-70

>Medtr4g075710.1 | signal recognition particle 43 kDa protein | HC |
           chr4:28952962-28954435 | 20130731
          Length = 391

 Score =  263 bits (671), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 130/189 (68%), Positives = 145/189 (76%)

Query: 1   MAALHMAAGYVRPGVAKLLLELGADPEVEDKRGRTALDLARELLNATPKGNPMQFXXXXX 60
           ++ALHMAAGYVRPGVAKLLLELGADPE+ D RGRTALDLARELL ATPKGNPMQF     
Sbjct: 192 LSALHMAAGYVRPGVAKLLLELGADPEISDDRGRTALDLARELLKATPKGNPMQFGRRMG 251

Query: 61  XXXXXXXXXXAVFEYAEVEEILERRGKGENLEYLVRWKDGGGNEWVNARFVAEDLVRDYE 120
                     AVFEYAEVEEI+E+RGKGENLEYLV+WKDG  NEW+  RFVAEDLVRDYE
Sbjct: 252 LEGVVRVLEGAVFEYAEVEEIMEKRGKGENLEYLVKWKDGSANEWIKGRFVAEDLVRDYE 311

Query: 121 AGLEYXXXXXXXXXXXXDEGKLELLVKWVDLEQPTWEPEENVDPELVKLYEQSNNQAQPS 180
           AGLEY            D+GK E LVKWVDL++PTWEPEENVD ELVK+++ SNNQAQP 
Sbjct: 312 AGLEYAVAEAVVGRRVGDDGKYEFLVKWVDLDEPTWEPEENVDSELVKVFDLSNNQAQPG 371

Query: 181 SNGPASNQD 189
           ++   S  D
Sbjct: 372 NDNGVSTVD 380