Miyakogusa Predicted Gene

Lj3g3v3338560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3338560.1 Non Characterized Hit- tr|Q9SZ07|Q9SZ07_ARATH
Putative uncharacterized protein AT4g34420
OS=Arabidop,52.08,3e-17,seg,NULL,CUFF.45661.1
         (163 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g069830.1 | SWI/SNF complex subunit SWI3D | HC | chr4:2625...    94   4e-20
Medtr4g069830.2 | SWI/SNF complex subunit SWI3D | HC | chr4:2625...    94   4e-20

>Medtr4g069830.1 | SWI/SNF complex subunit SWI3D | HC |
           chr4:26258593-26267090 | 20130731
          Length = 1041

 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/132 (51%), Positives = 78/132 (59%), Gaps = 16/132 (12%)

Query: 1   MEEKRRETASQPPPTTDSPASEPVPPRRRAGGNKRKASA---SNPSSIPSKRATREKASP 57
           MEEKR      PP T D+PA EP P RRRAGGNKRK+ +   SN +S  SKR TREKASP
Sbjct: 1   MEEKR------PPSTVDTPAPEPTPSRRRAGGNKRKSGSLNASNSASTSSKRITREKASP 54

Query: 58  IHFPPLHNGPLTRARQIP-SNLXXXXXXXXXXXXXXXXXVKHSERASQGQGLGGESSALA 116
           +H PP HNGPLTRARQIP ++                  VKH   A Q Q L     A  
Sbjct: 55  LHHPPPHNGPLTRARQIPNNSSAAANSSTAGGSASAPAAVKH---APQTQAL---VVAAE 108

Query: 117 EMLKKESEWESL 128
           ++ KKESEWES+
Sbjct: 109 QLKKKESEWESM 120


>Medtr4g069830.2 | SWI/SNF complex subunit SWI3D | HC |
           chr4:26258609-26267090 | 20130731
          Length = 1039

 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/132 (51%), Positives = 78/132 (59%), Gaps = 16/132 (12%)

Query: 1   MEEKRRETASQPPPTTDSPASEPVPPRRRAGGNKRKASA---SNPSSIPSKRATREKASP 57
           MEEKR      PP T D+PA EP P RRRAGGNKRK+ +   SN +S  SKR TREKASP
Sbjct: 1   MEEKR------PPSTVDTPAPEPTPSRRRAGGNKRKSGSLNASNSASTSSKRITREKASP 54

Query: 58  IHFPPLHNGPLTRARQIP-SNLXXXXXXXXXXXXXXXXXVKHSERASQGQGLGGESSALA 116
           +H PP HNGPLTRARQIP ++                  VKH   A Q Q L     A  
Sbjct: 55  LHHPPPHNGPLTRARQIPNNSSAAANSSTAGGSASAPAAVKH---APQTQAL---VVAAE 108

Query: 117 EMLKKESEWESL 128
           ++ KKESEWES+
Sbjct: 109 QLKKKESEWESM 120