Miyakogusa Predicted Gene

Lj3g3v3200860.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v3200860.1 tr|B9HPH5|B9HPH5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_768209 PE=4
SV=1,32.68,1e-18,seg,NULL; DUF4378,Domain of unknown function
DUF4378,gene.g50434.t1.1
         (208 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g096870.1 | GTP-binding protein Obg/CgtA protein | HC | ch...   134   5e-32
Medtr2g096870.2 | GTP-binding protein Obg/CgtA protein | HC | ch...   134   6e-32
Medtr4g021865.1 | DUF4378 domain protein | HC | chr4:7330526-732...    57   1e-08
Medtr1g047660.1 | DUF3741 family protein | HC | chr1:18012766-18...    52   3e-07

>Medtr2g096870.1 | GTP-binding protein Obg/CgtA protein | HC |
           chr2:41402050-41405811 | 20130731
          Length = 692

 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 103/170 (60%), Gaps = 5/170 (2%)

Query: 40  DKDPNFKCVKDVFGFLCFMGYEDIQMWHXXXXXXXXXXXXXXMDLEVSLCNKIESCGEET 99
           + D NFK VKD+  F  FMG E  QM +                LE    ++ E   EE 
Sbjct: 524 ENDSNFKYVKDILEFSGFMGNEQTQMRYTVDQPMKPSLFTA---LEEIFLHENECSEEEN 580

Query: 100 INPYHYQLLFSVVKEVVYEIYEGSPIHFPKHY-FNRCLYSMHREHYLLHEVWTRVNSYLS 158
           IN   +QLLF++V EV+++IYE SP +FPK + FN  L  M + +YL+ EVW  V+SYL 
Sbjct: 581 INMCDHQLLFNLVNEVLFQIYENSPTYFPKPFAFNYKLKPMPKGNYLVKEVWDSVSSYLR 640

Query: 159 LRISEQDHSIDAVVGQDLAKRSGWVKFQQEEEHAVLELEGMIVDDLLNEV 208
           LR  E D ++D VVG+DL K SGW+  QQEEE   LELE MI+DDLL+E+
Sbjct: 641 LR-PELDQTLDDVVGRDLTKGSGWMNLQQEEECVSLELEEMIIDDLLDEI 689


>Medtr2g096870.2 | GTP-binding protein Obg/CgtA protein | HC |
           chr2:41402176-41405675 | 20130731
          Length = 730

 Score =  134 bits (337), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 103/170 (60%), Gaps = 5/170 (2%)

Query: 40  DKDPNFKCVKDVFGFLCFMGYEDIQMWHXXXXXXXXXXXXXXMDLEVSLCNKIESCGEET 99
           + D NFK VKD+  F  FMG E  QM +                LE    ++ E   EE 
Sbjct: 562 ENDSNFKYVKDILEFSGFMGNEQTQMRYTVDQPMKPSLFTA---LEEIFLHENECSEEEN 618

Query: 100 INPYHYQLLFSVVKEVVYEIYEGSPIHFPKHY-FNRCLYSMHREHYLLHEVWTRVNSYLS 158
           IN   +QLLF++V EV+++IYE SP +FPK + FN  L  M + +YL+ EVW  V+SYL 
Sbjct: 619 INMCDHQLLFNLVNEVLFQIYENSPTYFPKPFAFNYKLKPMPKGNYLVKEVWDSVSSYLR 678

Query: 159 LRISEQDHSIDAVVGQDLAKRSGWVKFQQEEEHAVLELEGMIVDDLLNEV 208
           LR  E D ++D VVG+DL K SGW+  QQEEE   LELE MI+DDLL+E+
Sbjct: 679 LR-PELDQTLDDVVGRDLTKGSGWMNLQQEEECVSLELEEMIIDDLLDEI 727


>Medtr4g021865.1 | DUF4378 domain protein | HC |
           chr4:7330526-7328842 | 20130731
          Length = 433

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 12/105 (11%)

Query: 104 HYQLLFSVVKEVVYEIYEGSPIHFPKHYFNRCLYSMHREHYLLHEVWTRVNSYLSLRISE 163
           ++Q+LF ++ E + EIY  S  + P       +   H     LH+VWT ++  L LR S+
Sbjct: 334 NHQVLFDLINETMLEIYGRSDSYPP-------MVGCH----TLHKVWTHMSKSLCLR-SK 381

Query: 164 QDHSIDAVVGQDLAKRSGWVKFQQEEEHAVLELEGMIVDDLLNEV 208
               ID  V +DL+K  GWV  Q  +E   LE+E M+  DLL E+
Sbjct: 382 GGQKIDDHVSRDLSKNDGWVNGQFHDEGVGLEVEDMVFHDLLEEI 426


>Medtr1g047660.1 | DUF3741 family protein | HC |
           chr1:18012766-18009023 | 20130731
          Length = 847

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 33/187 (17%)

Query: 38  DADKDPNFKCVKDVFGFLCFMGYEDIQMWHXXXXXXXXXXXXXXMDLEVSLCNKIESC-- 95
           D  K+  F  VK V     F   E + +W+                ++ S+ +++E C  
Sbjct: 675 DTSKEAAFNYVKKVLELSGFTANESLGVWYSDN-----------QPVDPSIYDELEGCLL 723

Query: 96  ------GE-ETINPYHYQLLFSVVKEVVYEIYEGSPIHFPKHYFNRCLYSMHREHYL--- 145
                 G  +     ++ LLF ++ E + EI+  S  ++PK      L S+   H+L   
Sbjct: 724 LDPDCSGNCDEGGQCNHLLLFDIINEGLLEIFGRSYSYYPK-----PLSSLSYVHHLPTG 778

Query: 146 ----LHEVWTRVNSYLSLRISEQDHSIDAVVGQDLAKRSGWVKFQQEEEHAVLELEGMIV 201
               LH+VW  ++ YL+    E   S+D  V +DLAK  GW+  Q + E   LE++ +I 
Sbjct: 779 GNNVLHKVWKLISWYLTT-CDEAYPSLDYYVSKDLAKHDGWMNLQFDSECVGLEIDDLIF 837

Query: 202 DDLLNEV 208
           D LL E+
Sbjct: 838 DYLLEEI 844