Miyakogusa Predicted Gene

Lj3g3v2737550.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2737550.1 Non Characterized Hit- tr|D8T2L7|D8T2L7_SELML
Putative uncharacterized protein OS=Selaginella
moelle,47.87,0.0000000000001,seg,NULL; 39S RIBOSOMAL PROTEIN L18,
MITOCHONDRIAL,NULL; Ribosomal_L18p,Ribosomal protein L18/L5;
Tr,CUFF.44563.1
         (114 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g114200.1 | 50S ribosomal L18-like protein | HC | chr1:515...   162   5e-41
Medtr3g012540.1 | structural constituent of ribosome protein | H...    57   5e-09
Medtr4g032660.1 | 50S ribosomal protein L18 family protein | HC ...    55   2e-08
Medtr5g006310.1 | structural constituent of ribosome protein | H...    46   9e-06

>Medtr1g114200.1 | 50S ribosomal L18-like protein | HC |
           chr1:51533429-51531111 | 20130731
          Length = 114

 Score =  162 bits (411), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 87/102 (85%)

Query: 13  TKFLKPYVLRMHFTNKNVSAQVIHXXXXXXXXXXXXQEKALRSSLETSRDVAAAAKIGKV 72
           T++LKPYVL+MHFTNK VSAQVIH            QEKALRSSLET+RDVAAAAKIGK+
Sbjct: 13  TQYLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETTRDVAAAAKIGKL 72

Query: 73  LAERLLFKDIPAVSVHLKREQKYHGKVKAVIDSLREAGVKLL 114
           LAERL  KDIPAVSVHLKREQ+YHGKVKAVIDSLREAGV+LL
Sbjct: 73  LAERLSLKDIPAVSVHLKREQRYHGKVKAVIDSLREAGVRLL 114


>Medtr3g012540.1 | structural constituent of ribosome protein | HC |
           chr3:3539643-3535836 | 20130731
          Length = 187

 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 51/99 (51%)

Query: 15  FLKPYVLRMHFTNKNVSAQVIHXXXXXXXXXXXXQEKALRSSLETSRDVAAAAKIGKVLA 74
           +++P+ L +  + + VSA + H              K +++ L +  D+ A   IG++LA
Sbjct: 84  YMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIGRILA 143

Query: 75  ERLLFKDIPAVSVHLKREQKYHGKVKAVIDSLREAGVKL 113
           ER +  D+   S   +   K+ GK++AV+ SL + G+ L
Sbjct: 144 ERAMEADVYTASYTPRDRDKFEGKIRAVVQSLIDNGIDL 182


>Medtr4g032660.1 | 50S ribosomal protein L18 family protein | HC |
           chr4:11256027-11260142 | 20130731
          Length = 199

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 55/97 (56%)

Query: 15  FLKPYVLRMHFTNKNVSAQVIHXXXXXXXXXXXXQEKALRSSLETSRDVAAAAKIGKVLA 74
           +++P++L + F+ K V A+V H              K LR+SL +  D  A   IG+++A
Sbjct: 100 YMRPFLLDIFFSKKFVHAKVTHRGTSKVICVATTNAKDLRNSLPSLIDPEACRVIGRLIA 159

Query: 75  ERLLFKDIPAVSVHLKREQKYHGKVKAVIDSLREAGV 111
           ER    D+ A++   +++++  G++  +ID+++E G+
Sbjct: 160 ERSKEADVYAMAYEPRKKERIEGRLGIIIDTVKENGI 196


>Medtr5g006310.1 | structural constituent of ribosome protein | HC |
           chr5:854406-856255 | 20130731
          Length = 404

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 52/97 (53%)

Query: 17  KPYVLRMHFTNKNVSAQVIHXXXXXXXXXXXXQEKALRSSLETSRDVAAAAKIGKVLAER 76
           +P+ L ++ +  +V A ++H              K L+  L ++++    A +GK+LA+R
Sbjct: 242 EPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDLKFDLTSTKNKTTCAAVGKILAQR 301

Query: 77  LLFKDIPAVSVHLKREQKYHGKVKAVIDSLREAGVKL 113
            L  DI  +    ++ ++  GK++ V++S+ ++G+ +
Sbjct: 302 ALADDIHDIIYTPRKGERVEGKLQIVLNSIIDSGINV 338