Miyakogusa Predicted Gene

Lj3g3v2317900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2317900.1 Non Characterized Hit- tr|E9CGW1|E9CGW1_CAPO3
Putative uncharacterized protein OS=Capsaspora owczarz,41.67,5e-19,no
description,NADH dehydrogenase [ubiquinone] 1 alpha subcomplex
assembly factor 3; DUF498,NADH deh,CUFF.43837.1
         (168 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g009670.1 | nuclear protein E3-3, putative | HC | chr8:234...   286   8e-78

>Medtr8g009670.1 | nuclear protein E3-3, putative | HC |
           chr8:2348994-2345053 | 20130731
          Length = 177

 Score =  286 bits (731), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 142/177 (80%), Positives = 159/177 (89%), Gaps = 9/177 (5%)

Query: 1   MSIKQR----LPNLIRTLRNEQPLK----PQQN-HALPSLRRAFSLYDQINVIDKLPDDQ 51
           M+++QR    LPNLIR+LRNE PLK    P  N ++LPSLRRAFSLYDQIN+ID +P+DQ
Sbjct: 1   MAVRQRAVTALPNLIRSLRNEHPLKLKPSPHNNPNSLPSLRRAFSLYDQINLIDNVPEDQ 60

Query: 52  LRFQGYSDTGFTVNRVEYEGSLLCVGNLLLSWKPNKFSEITADSLSLFQIVRPIPEILIL 111
           LRFQG+ DTGFTVN VEYEGSLLCVGNL++SWKP KFSEITA+SLS FQIVRPIPEILI+
Sbjct: 61  LRFQGFKDTGFTVNGVEYEGSLLCVGNLIMSWKPTKFSEITAESLSFFQIVRPIPEILIV 120

Query: 112 GCGRNIQPVDPELRKFIRSTGMKLEAVDSRNAASTYNILNEEGRIVAAALLPHGVSS 168
           GCGRNIQ VDPELR+FIRSTGMKLEAVDSRNAASTYNILNEEGRIVAAALLP+GV+S
Sbjct: 121 GCGRNIQHVDPELRQFIRSTGMKLEAVDSRNAASTYNILNEEGRIVAAALLPYGVTS 177