Miyakogusa Predicted Gene

Lj3g3v2200290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2200290.1 CUFF.43686.1
         (374 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g010210.1 | methyl-CpG-binding domain protein | LC | chr4:...   140   2e-33
Medtr4g114770.1 | methyl-CpG-binding domain protein | HC | chr4:...   123   2e-28
Medtr0339s0020.1 | methyl-CpG-binding domain protein | HC | scaf...   120   2e-27
Medtr4g114785.1 | methyl-CpG-binding domain protein | HC | chr4:...   117   3e-26
Medtr0339s0010.1 | methyl-CpG-binding domain protein | HC | scaf...   106   5e-23
Medtr4g114770.2 | methyl-CpG-binding domain protein | HC | chr4:...   105   5e-23
Medtr6g060845.2 | methyl-CpG-binding domain protein | HC | chr6:...    97   2e-20
Medtr6g060860.2 | methyl-CpG-binding domain protein | HC | chr6:...    97   3e-20
Medtr6g060685.1 | methyl-CpG-binding domain protein | HC | chr6:...    97   3e-20
Medtr6g060860.1 | methyl-CpG-binding domain protein | HC | chr6:...    96   5e-20
Medtr6g060845.1 | methyl-CpG-binding domain protein | HC | chr6:...    79   8e-15
Medtr6g052050.1 | methyl-CpG-binding domain protein | HC | chr6:...    78   2e-14

>Medtr4g010210.1 | methyl-CpG-binding domain protein | LC |
           chr4:2290642-2289557 | 20130731
          Length = 361

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 130/371 (35%), Positives = 157/371 (42%), Gaps = 58/371 (15%)

Query: 25  FFPKKVGTPRKQSEITFIAPTGEEISSKKQLEQYLKAHPGNPAISEFDWGTGETPRRSAR 84
           FFPKK GTPRK  EI F+APTGEEISSK QL++YLK H G+P ISEF WGTGETPRRS R
Sbjct: 3   FFPKKKGTPRK-PEIVFVAPTGEEISSKAQLKKYLKNHSGDPDISEFHWGTGETPRRSTR 61

Query: 85  ISVKAKSTPPPAETDPPXXXXXXXXXXXXXDNXXXXXXXXXXXXXXXXXXNTADPNDADD 144
           I   AK+TPPPA+ +PP                                   ADP+DAD 
Sbjct: 62  IRETAKTTPPPAQAEPPKKRSRKKEDKETETESPSEEVKEKGKSSAEELK--ADPSDADK 119

Query: 145 KPKTDAEETKQSNVEGDNVTAKKP--------------------------QXXXXXXXXX 178
               +AEE KQSNVE + V A+KP                          +         
Sbjct: 120 --NVNAEEIKQSNVEAETVIAEKPTLMAEPAKRIIVHALSTVAAAKPHLEKPQVEDTSMT 177

Query: 179 XXXXXVGEALNDAVMTETPQEEAPVV----VSEKENGAVDSKPDNVEGENVTAEKPQXXX 234
                V E   +AV+ E PQ E P V    ++E     ++   D    E    EKPQ   
Sbjct: 178 EPVKQVSEEALNAVVAEKPQLENPQVEDTLMAEPTEKLLEEASDAAVAEKPQLEKPQVEE 237

Query: 235 XXXXXXXXXKFAEDTFYDAVMTEIPQGEEPVVESERENGAVDSNKDNSGTVTL------- 287
                        +   D V+ E   GE P VE E+EN   +  K      +L       
Sbjct: 238 ISMAEPAEQLL--EKSLDPVVAEKLSGEAP-VELEKENRTAELEKPQVEEPSLAEPVEQL 294

Query: 288 ------EVNGGAXXXXXXXXXXXXNGAVDSN--QDNPGTVTLVENGGAEKVNPTVEDIIN 339
                  V                NG  DS+  Q+  G     E+ GAEKV+  VEDIIN
Sbjct: 295 SVEALDAVVAEKPKEEAPVELEKENGTADSSYKQEKSGA---EESEGAEKVSLNVEDIIN 351

Query: 340 NNAKNEIPVSD 350
              KNEI  SD
Sbjct: 352 G--KNEISASD 360


>Medtr4g114770.1 | methyl-CpG-binding domain protein | HC |
           chr4:47267256-47272262 | 20130731
          Length = 355

 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/95 (64%), Positives = 73/95 (76%), Gaps = 3/95 (3%)

Query: 8   EQVLSVELPAPPAWKKLFFPKKVGTPRKQSEITFIAPTGEEISSKKQLEQYLKAHPGNPA 67
           E+ +S ELPAP  W K FFPKK GTP+K +EI F +PTGEEI +K+QLE+YLK + G P 
Sbjct: 21  EEPVSFELPAPSGWTKKFFPKKSGTPKK-NEIVFTSPTGEEIRTKRQLEKYLKTN-GGPN 78

Query: 68  ISEFDWGTGETPRRSARISVKAKSTPPPA-ETDPP 101
           ISEFDWGTGETPRRS+RI  K K+ PP   +TDPP
Sbjct: 79  ISEFDWGTGETPRRSSRIVEKVKAAPPAEPKTDPP 113


>Medtr0339s0020.1 | methyl-CpG-binding domain protein | HC |
           scaffold0339:11869-8568 | 20130731
          Length = 324

 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/95 (62%), Positives = 72/95 (75%), Gaps = 3/95 (3%)

Query: 8   EQVLSVELPAPPAWKKLFFPKKVGTPRKQSEITFIAPTGEEISSKKQLEQYLKAHPGNPA 67
           E+ +S ELPAP  W K FFPKK GTP+K +EI F +PTGEEI +K+ LE+YLK + G P 
Sbjct: 21  EEPVSFELPAPSGWTKKFFPKKSGTPKK-NEIVFTSPTGEEIRTKRHLEKYLKTN-GGPN 78

Query: 68  ISEFDWGTGETPRRSARISVKAKSTPPPA-ETDPP 101
           ISEFDWGTGETPRRS+RI  K K+ PP   ++DPP
Sbjct: 79  ISEFDWGTGETPRRSSRIVEKVKAAPPAEPKSDPP 113


>Medtr4g114785.1 | methyl-CpG-binding domain protein | HC |
           chr4:47279221-47281232 | 20130731
          Length = 219

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/95 (62%), Positives = 72/95 (75%), Gaps = 3/95 (3%)

Query: 8   EQVLSVELPAPPAWKKLFFPKKVGTPRKQSEITFIAPTGEEISSKKQLEQYLKAHPGNPA 67
           E+ +S ELPAP  W K FFPKK GTP+K +EI F +PTGEEI +K+ LE+YLK + G P 
Sbjct: 21  EEPVSFELPAPSGWTKKFFPKKSGTPKK-NEIVFTSPTGEEIRTKRHLEKYLKTN-GGPN 78

Query: 68  ISEFDWGTGETPRRSARISVKAKSTPPPA-ETDPP 101
           ISEFDWGTGETPRRS+RI  K K+ PP   ++DPP
Sbjct: 79  ISEFDWGTGETPRRSSRIVEKVKAAPPAEPKSDPP 113


>Medtr0339s0010.1 | methyl-CpG-binding domain protein | HC |
           scaffold0339:180-1136 | 20130731
          Length = 318

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/78 (66%), Positives = 62/78 (79%), Gaps = 3/78 (3%)

Query: 25  FFPKKVGTPRKQSEITFIAPTGEEISSKKQLEQYLKAHPGNPAISEFDWGTGETPRRSAR 84
           FFPKK GTP+K +EI F +PTGEEI +K+QLE+YLK + G P ISEFDWGTGETPRRS+R
Sbjct: 1   FFPKKSGTPKK-NEIVFTSPTGEEIRTKRQLEKYLKTN-GGPNISEFDWGTGETPRRSSR 58

Query: 85  ISVKAKSTPPPA-ETDPP 101
           I  K K+ PP   +TDPP
Sbjct: 59  IVEKVKAAPPAEPKTDPP 76


>Medtr4g114770.2 | methyl-CpG-binding domain protein | HC |
           chr4:47269385-47272262 | 20130731
          Length = 333

 Score =  105 bits (263), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/78 (66%), Positives = 62/78 (79%), Gaps = 3/78 (3%)

Query: 25  FFPKKVGTPRKQSEITFIAPTGEEISSKKQLEQYLKAHPGNPAISEFDWGTGETPRRSAR 84
           FFPKK GTP+K +EI F +PTGEEI +K+QLE+YLK + G P ISEFDWGTGETPRRS+R
Sbjct: 16  FFPKKSGTPKK-NEIVFTSPTGEEIRTKRQLEKYLKTN-GGPNISEFDWGTGETPRRSSR 73

Query: 85  ISVKAKSTPPPA-ETDPP 101
           I  K K+ PP   +TDPP
Sbjct: 74  IVEKVKAAPPAEPKTDPP 91


>Medtr6g060845.2 | methyl-CpG-binding domain protein | HC |
           chr6:21068490-21062754 | 20130731
          Length = 140

 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 70/97 (72%), Gaps = 5/97 (5%)

Query: 7   SEQVLSVELPAPPAW-KKLFFPKKVGTPRKQSEITFIAPTGEEISSKKQLEQYLKAHPGN 65
           SE+ + ++LPAP  W KK FFPK  GTP K  E+ F AP+GE+I +++ +E+YLK + G 
Sbjct: 19  SEEPVWLDLPAPSGWTKKYFFPKS-GTPTKY-EVVFTAPSGEKIHTRRHMEEYLKRN-GG 75

Query: 66  PAISEFDWGTGETPRRSARISVKAKSTPP-PAETDPP 101
           P +SEFDWG GETPRRSARI  KAK+ P    E++PP
Sbjct: 76  PKVSEFDWGNGETPRRSARIIEKAKAAPLVEHESEPP 112


>Medtr6g060860.2 | methyl-CpG-binding domain protein | HC |
           chr6:21090994-21084486 | 20130731
          Length = 172

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 70/97 (72%), Gaps = 5/97 (5%)

Query: 7   SEQVLSVELPAPPAW-KKLFFPKKVGTPRKQSEITFIAPTGEEISSKKQLEQYLKAHPGN 65
           SE+ + ++LPAP  W KK FFPK  GTP K  E+ F AP+GE+I +++ +E+YLK + G 
Sbjct: 19  SEEPVWLDLPAPSGWTKKYFFPKS-GTPTKY-EVVFTAPSGEKIHTRRHMEEYLKIN-GG 75

Query: 66  PAISEFDWGTGETPRRSARISVKAKSTPP-PAETDPP 101
           P +SEFDWG GETPRRSARI  KAK+ P    E++PP
Sbjct: 76  PNVSEFDWGNGETPRRSARIIEKAKAAPLVEHESEPP 112


>Medtr6g060685.1 | methyl-CpG-binding domain protein | HC |
           chr6:21043844-21039782 | 20130731
          Length = 213

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 70/97 (72%), Gaps = 5/97 (5%)

Query: 7   SEQVLSVELPAPPAW-KKLFFPKKVGTPRKQSEITFIAPTGEEISSKKQLEQYLKAHPGN 65
           SE+ + ++LPAP  W KK FFPK  GTP K  E+ F AP+GE+I +++ +E+YLK + G 
Sbjct: 60  SEEPVWLDLPAPSGWTKKYFFPKS-GTPTKY-EVVFTAPSGEKIHTRRHMEEYLKKN-GG 116

Query: 66  PAISEFDWGTGETPRRSARISVKAKSTPP-PAETDPP 101
           P +SEFDWG GETPRRSARI  KAK+ P    E++PP
Sbjct: 117 PKVSEFDWGNGETPRRSARIIEKAKAAPLVEHESEPP 153


>Medtr6g060860.1 | methyl-CpG-binding domain protein | HC |
           chr6:21088612-21084932 | 20130731
          Length = 181

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 70/97 (72%), Gaps = 5/97 (5%)

Query: 7   SEQVLSVELPAPPAW-KKLFFPKKVGTPRKQSEITFIAPTGEEISSKKQLEQYLKAHPGN 65
           SE+ + ++LPAP  W KK FFPK  GTP K  E+ F AP+GE+I +++ +E+YLK + G 
Sbjct: 60  SEEPVWLDLPAPSGWTKKYFFPKS-GTPTKY-EVVFTAPSGEKIHTRRHMEEYLKIN-GG 116

Query: 66  PAISEFDWGTGETPRRSARISVKAKSTPP-PAETDPP 101
           P +SEFDWG GETPRRSARI  KAK+ P    E++PP
Sbjct: 117 PNVSEFDWGNGETPRRSARIIEKAKAAPLVEHESEPP 153


>Medtr6g060845.1 | methyl-CpG-binding domain protein | HC |
           chr6:21063343-21062754 | 20130731
          Length = 124

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 44/80 (55%), Positives = 58/80 (72%), Gaps = 4/80 (5%)

Query: 23  KLFFPKKVGTPRKQSEITFIAPTGEEISSKKQLEQYLKAHPGNPAISEFDWGTGETPRRS 82
           + FFPK  GTP K  E+ F AP+GE+I +++ +E+YLK + G P +SEFDWG GETPRRS
Sbjct: 20  QYFFPKS-GTPTKY-EVVFTAPSGEKIHTRRHMEEYLKRN-GGPKVSEFDWGNGETPRRS 76

Query: 83  ARISVKAKSTP-PPAETDPP 101
           ARI  KAK+ P    E++PP
Sbjct: 77  ARIIEKAKAAPLVEHESEPP 96


>Medtr6g052050.1 | methyl-CpG-binding domain protein | HC |
          chr6:18157558-18155903 | 20130731
          Length = 124

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 50/69 (72%), Gaps = 4/69 (5%)

Query: 25 FFPKKVGTPRKQSEITFIAPTGEEISSKKQLEQYLKAHPGNPAISEFDWGTGETPRRSAR 84
          FFP +  T   ++EI F APTGE+I +++ +E+YLK + G P IS+FDWG GETPRRS R
Sbjct: 28 FFPSRTPT---KNEIVFAAPTGEKIHTRRHMEKYLKENSG-PKISKFDWGKGETPRRSTR 83

Query: 85 ISVKAKSTP 93
          I  KAK+ P
Sbjct: 84 IIDKAKAAP 92