Miyakogusa Predicted Gene
- Lj3g3v1541420.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v1541420.1 Non Characterized Hit- tr|Q8S9G5|Q8S9G5_BRANA
Putative PCF11 protein OS=Brassica napus GN=pcf11
PE=2,41.73,2e-19,PRE-MRNA CLEAVAGE COMPLEX
II,NULL,NODE_51176_length_374_cov_76.981285.path2.1
(127 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g011450.1 | PCF11P-related protein | HC | chr6:3246456-325... 228 1e-60
Medtr6g011450.2 | PCF11P-related protein | HC | chr6:3248562-325... 227 2e-60
Medtr6g011470.1 | PCF11P-related protein | HC | chr6:3262423-326... 216 5e-57
Medtr4g073340.1 | hypothetical protein | HC | chr4:27754923-2775... 193 3e-50
Medtr7g103840.1 | ENTH/VHS-like protein | HC | chr7:41991606-419... 91 2e-19
Medtr7g103840.2 | ENTH/VHS-like protein | HC | chr7:41991161-419... 91 2e-19
Medtr1g061130.3 | RNA polymerase II-binding domain protein | HC ... 78 2e-15
Medtr1g061130.1 | RNA polymerase II-binding domain protein | HC ... 78 2e-15
Medtr1g061130.2 | RNA polymerase II-binding domain protein | HC ... 78 2e-15
>Medtr6g011450.1 | PCF11P-related protein | HC |
chr6:3246456-3252804 | 20130731
Length = 840
Score = 228 bits (580), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 113/124 (91%), Positives = 118/124 (95%)
Query: 1 MDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTESAPGFLPNDTVEEKKDDEELA 60
MDWHVTKNRMSKNRKQKPSRKWFVSE MWLSGAEALGTESAPGFLP +T EEKK+DEELA
Sbjct: 693 MDWHVTKNRMSKNRKQKPSRKWFVSETMWLSGAEALGTESAPGFLPTETTEEKKEDEELA 752
Query: 61 VPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGTTAGLDRSQLGPIIHAKCR 120
VPADEDQNTCALCGEPF+EFYSDETEEWMYRGAVYLNAPNG T G+DRSQLG IIHAKCR
Sbjct: 753 VPADEDQNTCALCGEPFEEFYSDETEEWMYRGAVYLNAPNGITTGMDRSQLGSIIHAKCR 812
Query: 121 SESS 124
SES+
Sbjct: 813 SEST 816
>Medtr6g011450.2 | PCF11P-related protein | HC |
chr6:3248562-3252804 | 20130731
Length = 702
Score = 227 bits (579), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 113/124 (91%), Positives = 118/124 (95%)
Query: 1 MDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTESAPGFLPNDTVEEKKDDEELA 60
MDWHVTKNRMSKNRKQKPSRKWFVSE MWLSGAEALGTESAPGFLP +T EEKK+DEELA
Sbjct: 555 MDWHVTKNRMSKNRKQKPSRKWFVSETMWLSGAEALGTESAPGFLPTETTEEKKEDEELA 614
Query: 61 VPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGTTAGLDRSQLGPIIHAKCR 120
VPADEDQNTCALCGEPF+EFYSDETEEWMYRGAVYLNAPNG T G+DRSQLG IIHAKCR
Sbjct: 615 VPADEDQNTCALCGEPFEEFYSDETEEWMYRGAVYLNAPNGITTGMDRSQLGSIIHAKCR 674
Query: 121 SESS 124
SES+
Sbjct: 675 SEST 678
>Medtr6g011470.1 | PCF11P-related protein | HC |
chr6:3262423-3263241 | 20130731
Length = 210
Score = 216 bits (550), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 99/121 (81%), Positives = 106/121 (87%)
Query: 1 MDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTESAPGFLPNDTVEEKKDDEELA 60
MDWHVTKNRMSKN KQKPSR WFVSE MWL GAE LG +SAPGFLP +T EEK++DE+LA
Sbjct: 90 MDWHVTKNRMSKNCKQKPSRMWFVSEMMWLKGAETLGVKSAPGFLPTETTEEKREDEDLA 149
Query: 61 VPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGTTAGLDRSQLGPIIHAKCR 120
VPADEDQNTCALCGEP D FYSDETE+WM R AVYLNAPNG T G+D SQLGPIIHAKCR
Sbjct: 150 VPADEDQNTCALCGEPLDVFYSDETEDWMCRVAVYLNAPNGITTGMDMSQLGPIIHAKCR 209
Query: 121 S 121
S
Sbjct: 210 S 210
>Medtr4g073340.1 | hypothetical protein | HC |
chr4:27754923-27752645 | 20130731
Length = 521
Score = 193 bits (491), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 101/124 (81%), Positives = 108/124 (87%)
Query: 1 MDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTESAPGFLPNDTVEEKKDDEELA 60
MDWHVTKNRMSKNRKQKPSR WFVSE MWLSGAEALG ESA FL +T EEKK+DE+LA
Sbjct: 374 MDWHVTKNRMSKNRKQKPSRMWFVSETMWLSGAEALGAESALDFLLTETTEEKKEDEKLA 433
Query: 61 VPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGTTAGLDRSQLGPIIHAKCR 120
VP DEDQNTCALC EPF+EFYSDETE+WMYRGAVYLN PNG T G+ SQL PIIHAKCR
Sbjct: 434 VPPDEDQNTCALCREPFEEFYSDETEDWMYRGAVYLNMPNGITTGMAMSQLCPIIHAKCR 493
Query: 121 SESS 124
SES+
Sbjct: 494 SEST 497
>Medtr7g103840.1 | ENTH/VHS-like protein | HC | chr7:41991606-41997500
| 20130731
Length = 1029
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 80/131 (61%), Gaps = 12/131 (9%)
Query: 1 MDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTESAPGFLPNDTVEEKKDDE--- 57
++WH TK R +N SR+W+V+ W++ +ES F D+V+E D++
Sbjct: 893 LEWHATKER-EQNGLTVASRRWYVTSDDWIASKAECLSESE--F--TDSVDEYDDNKTDG 947
Query: 58 ---ELAVPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGTTAGLDRSQLGPI 114
+ V ADE+Q C LCGE F++ Y E +EWM++GAVYLN P+ + + ++ +GPI
Sbjct: 948 SQLDTMVVADENQCLCVLCGELFEDVYCQERDEWMFKGAVYLNNPD-SDSEMESRNVGPI 1006
Query: 115 IHAKCRSESSV 125
IHA+C S++S+
Sbjct: 1007 IHARCLSDNSI 1017
>Medtr7g103840.2 | ENTH/VHS-like protein | HC | chr7:41991161-41998262
| 20130731
Length = 1028
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 80/131 (61%), Gaps = 12/131 (9%)
Query: 1 MDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTESAPGFLPNDTVEEKKDDE--- 57
++WH TK R +N SR+W+V+ W++ +ES F D+V+E D++
Sbjct: 895 LEWHATKER-EQNGLTVASRRWYVTSDDWIASKAECLSESE--F--TDSVDEYDDNKTDG 949
Query: 58 ---ELAVPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGTTAGLDRSQLGPI 114
+ V ADE+Q C LCGE F++ Y E +EWM++GAVYLN P+ + + ++ +GPI
Sbjct: 950 SQLDTMVVADENQCLCVLCGELFEDVYCQERDEWMFKGAVYLNNPD-SDSEMESRNVGPI 1008
Query: 115 IHAKCRSESSV 125
IHA+C S++S+
Sbjct: 1009 IHARCLSDNSI 1019
>Medtr1g061130.3 | RNA polymerase II-binding domain protein | HC |
chr1:26672968-26665965 | 20130731
Length = 1041
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 6/130 (4%)
Query: 1 MDWHVTKNRMSKNRKQKPSRKWFVSERMWLSG-AEALGTESAPGFLPNDTVEEKKDDEEL 59
++WH T+ R + +W++ W++G AE L + E KD E+
Sbjct: 886 LEWHATRERECTGLIT--ASRWYLKSSDWVAGKAECPSENEFTDSLDSQDSETDKDQEDA 943
Query: 60 AVPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYL-NAPNGTTAGLDR--SQLGPIIH 116
V ADE+Q C LCGE F++ Y E EWM++ AVY+ NA T G++ S GPIIH
Sbjct: 944 MVLADENQCLCVLCGELFEDVYCHENSEWMFKAAVYMTNADIATEVGINDVISGRGPIIH 1003
Query: 117 AKCRSESSVA 126
+C S+ S++
Sbjct: 1004 TRCLSDYSLS 1013
>Medtr1g061130.1 | RNA polymerase II-binding domain protein | HC |
chr1:26672968-26665891 | 20130731
Length = 1021
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 6/130 (4%)
Query: 1 MDWHVTKNRMSKNRKQKPSRKWFVSERMWLSG-AEALGTESAPGFLPNDTVEEKKDDEEL 59
++WH T+ R + +W++ W++G AE L + E KD E+
Sbjct: 886 LEWHATRERECTGLIT--ASRWYLKSSDWVAGKAECPSENEFTDSLDSQDSETDKDQEDA 943
Query: 60 AVPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYL-NAPNGTTAGLDR--SQLGPIIH 116
V ADE+Q C LCGE F++ Y E EWM++ AVY+ NA T G++ S GPIIH
Sbjct: 944 MVLADENQCLCVLCGELFEDVYCHENSEWMFKAAVYMTNADIATEVGINDVISGRGPIIH 1003
Query: 117 AKCRSESSVA 126
+C S+ S++
Sbjct: 1004 TRCLSDYSLS 1013
>Medtr1g061130.2 | RNA polymerase II-binding domain protein | HC |
chr1:26672968-26665891 | 20130731
Length = 1021
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 6/130 (4%)
Query: 1 MDWHVTKNRMSKNRKQKPSRKWFVSERMWLSG-AEALGTESAPGFLPNDTVEEKKDDEEL 59
++WH T+ R + +W++ W++G AE L + E KD E+
Sbjct: 886 LEWHATRERECTGLIT--ASRWYLKSSDWVAGKAECPSENEFTDSLDSQDSETDKDQEDA 943
Query: 60 AVPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYL-NAPNGTTAGLDR--SQLGPIIH 116
V ADE+Q C LCGE F++ Y E EWM++ AVY+ NA T G++ S GPIIH
Sbjct: 944 MVLADENQCLCVLCGELFEDVYCHENSEWMFKAAVYMTNADIATEVGINDVISGRGPIIH 1003
Query: 117 AKCRSESSVA 126
+C S+ S++
Sbjct: 1004 TRCLSDYSLS 1013