Miyakogusa Predicted Gene

Lj3g3v1507280.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1507280.2 Non Characterized Hit- tr|I3SL79|I3SL79_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,89.34,0,Ribosomal protein L1,Ribosomal protein L1, superfamily;
Ribosomal_L1,Ribosomal protein L1; seg,NULL;,CUFF.42713.2
         (278 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g080120.1 | 50S ribosomal protein L1p | HC | chr4:31058644...   463   e-131
Medtr0059s0060.1 | 50S ribosomal protein L1p | HC | scaffold0059...   133   2e-31

>Medtr4g080120.1 | 50S ribosomal protein L1p | HC |
           chr4:31058644-31065034 | 20130731
          Length = 407

 Score =  463 bits (1192), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/273 (82%), Positives = 243/273 (89%)

Query: 1   MEMERRRIEAEDQLRARMVRAVEDEKMKVPFPLLIRPKQKEKPPVLDLMEAIRQVKANAK 60
           ME ERR+IEAEDQLR +M+++VEDEKMKVPFPL I+PKQKEKPP+ DL EAIRQVKANAK
Sbjct: 134 METERRKIEAEDQLRKKMMKSVEDEKMKVPFPLFIKPKQKEKPPLFDLSEAIRQVKANAK 193

Query: 61  AKFDETIEAHIRLGIESKRTELAVRGTVILPHGAPKXXXXXXXXXXXXXXXXXXXXXDIV 120
           AKFDET+EAH+RLGI+SKRTELAVRGTVILPHGAPK                     DIV
Sbjct: 194 AKFDETVEAHVRLGIDSKRTELAVRGTVILPHGAPKAVTVAVFAEGAEAEEAKAAGADIV 253

Query: 121 GGKELIEEIASGNNKLKVDKCFSTPGMAPHLGKIAQYLRKRRLMPDKKLGTLTNDISGQL 180
           GGKELIEEIASGNNKLKVDKCFSTPGMAPHLGKIAQYLRKRRLMPDKKLGTLT+DI+GQL
Sbjct: 254 GGKELIEEIASGNNKLKVDKCFSTPGMAPHLGKIAQYLRKRRLMPDKKLGTLTSDIAGQL 313

Query: 181 KELRQGRLEFKMESKSILHAGVGKVSYKDESLRENIGAFMNAVLLAKPAGLKKTSKYAGY 240
           KELRQGR+EFKMESKSILH GVGKVSYK+E+LRENIGAFMNAVL AKPAGLKKTSKYAGY
Sbjct: 314 KELRQGRIEFKMESKSILHVGVGKVSYKEENLRENIGAFMNAVLQAKPAGLKKTSKYAGY 373

Query: 241 VLSVHICSTMGPGFPVSIQSLSKAADNYKKMHV 273
           VLSVHICST+GPG PVSIQSLSKAADNYKK H+
Sbjct: 374 VLSVHICSTIGPGIPVSIQSLSKAADNYKKAHM 406


>Medtr0059s0060.1 | 50S ribosomal protein L1p | HC |
           scaffold0059:27467-21829 | 20130731
          Length = 359

 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 114/215 (53%), Gaps = 7/215 (3%)

Query: 47  DLMEAIRQVKANAKAKFDETIEAHIRLGIESKRTELAVRGTVILPHGAPKXXXXXXXXXX 106
           DL  AI  VK  AK KF ET+EAH RL I+ K  +  +R TV LP G  K          
Sbjct: 144 DLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPKGTGKPIKIAVLTQG 203

Query: 107 XXXXXXXXXXXDIVGGKELIEEIASGNNKLKVDKCFSTPGMAPHLGKIAQYLRKRRLMPD 166
                      D+VGG++LIE+I  G   ++ DK  ++P M P +  + + L  R LMP+
Sbjct: 204 EKFDEAKLAGADLVGGEDLIEQIKGGY--MEFDKLIASPDMMPKVATLGKILGPRGLMPN 261

Query: 167 KKLGTLTNDISGQLKELRQGRLEFKMESKSILHAGVGKVSYKDESLRENIGAFMNAVLLA 226
            K GT+T +I+  + E +QG++E++ +   I+H   GK  + +E L  N+ + + +V   
Sbjct: 262 PKAGTVTANITQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLTNLLSAIKSVETN 321

Query: 227 KPAGLKKTSKYAGYVLSVHICSTMGPGFPVSIQSL 261
           KP+G K       Y  S HICS MGP   ++I+ +
Sbjct: 322 KPSGAKGV-----YWKSAHICSAMGPSVRLNIKEM 351