Miyakogusa Predicted Gene

Lj3g3v1507280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1507280.1 tr|B6TB66|B6TB66_MAIZE 50S ribosomal protein L1
OS=Zea mays PE=2 SV=1,41.1,2e-18,no description,Ribosomal protein L1,
2-layer alpha/beta-sandwich; seg,NULL; Ribosomal protein
L1,Rib,CUFF.42713.1
         (234 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g080120.1 | 50S ribosomal protein L1p | HC | chr4:31058644...   217   8e-57
Medtr0059s0060.1 | 50S ribosomal protein L1p | HC | scaffold0059...    49   3e-06

>Medtr4g080120.1 | 50S ribosomal protein L1p | HC |
           chr4:31058644-31065034 | 20130731
          Length = 407

 Score =  217 bits (552), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 109/149 (73%), Positives = 123/149 (82%), Gaps = 2/149 (1%)

Query: 86  SGEAPEPQQ-RALTREDIRYVKDGPSITPVSYPMRVAPLPEDMVPGQKNDXXXXXXXXIE 144
           +   P P+Q RA TREDIRYVKD PSITPVSYP+RVAPLP+D  P    D        IE
Sbjct: 84  ASNTPIPEQPRAWTREDIRYVKDAPSITPVSYPVRVAPLPDDKAPVDV-DAMETERRKIE 142

Query: 145 AEDQLRARMVRAVEDEKMKVPFPLLIRPKQKEKPPVLDLMEAIRQVKANAKAKFDETIEA 204
           AEDQLR +M+++VEDEKMKVPFPL I+PKQKEKPP+ DL EAIRQVKANAKAKFDET+EA
Sbjct: 143 AEDQLRKKMMKSVEDEKMKVPFPLFIKPKQKEKPPLFDLSEAIRQVKANAKAKFDETVEA 202

Query: 205 HIRLGIESKRTELAVRGTVILPHGAPKVI 233
           H+RLGI+SKRTELAVRGTVILPHGAPK +
Sbjct: 203 HVRLGIDSKRTELAVRGTVILPHGAPKAV 231


>Medtr0059s0060.1 | 50S ribosomal protein L1p | HC |
           scaffold0059:27467-21829 | 20130731
          Length = 359

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 31/52 (59%)

Query: 182 DLMEAIRQVKANAKAKFDETIEAHIRLGIESKRTELAVRGTVILPHGAPKVI 233
           DL  AI  VK  AK KF ET+EAH RL I+ K  +  +R TV LP G  K I
Sbjct: 144 DLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPKGTGKPI 195