Miyakogusa Predicted Gene

Lj3g3v0642530.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0642530.1 Non Characterized Hit- tr|D8T4H1|D8T4H1_SELML
Putative uncharacterized protein OS=Selaginella
moelle,38.03,9e-16,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
coiled-coil,NULL,gene.g45768.t1.1
         (284 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g090110.1 | TFIIH basal transcription factor complex subun...   335   4e-92
Medtr6g071555.1 | TFIIH basal transcription factor complex subun...   308   3e-84

>Medtr1g090110.1 | TFIIH basal transcription factor complex subunit,
           putative | HC | chr1:40358314-40346004 | 20130731
          Length = 586

 Score =  335 bits (858), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 180/277 (64%), Positives = 205/277 (74%), Gaps = 29/277 (10%)

Query: 34  LFLKDGEILQVEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKEIPEAQHPLYRR 93
           +FLKD EIL+ EARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKE  EAQ+ LYRR
Sbjct: 259 VFLKDDEILENEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKETSEAQNTLYRR 318

Query: 94  TLLQDLNRQGALVLEGKTLDIMEMEH-----------IHESVGVREEARRNIFSKMTQIE 142
           TLLQDLNRQ  +VLEGKTLDI +MEH            HES GV EE RRN  SKM QIE
Sbjct: 319 TLLQDLNRQSEVVLEGKTLDI-DMEHPRTAVEALARRKHESDGVVEE-RRNRISKMAQIE 376

Query: 143 DLQAQDNHPFAPLCVKDPRDYFGSQQANV-----------EQTRGSLGSDKEAYGYLRAS 191
           DLQAQD+HPFAPLC+KDPRDYF SQQAN            E+ R +LGS+ EAYG LR S
Sbjct: 377 DLQAQDDHPFAPLCIKDPRDYFDSQQANAVKTLDDSLSGKEKIRCNLGSE-EAYGSLRES 435

Query: 192 ISKIKAKGLKDPLLSSEIALNGL--MTKNVSGTKSHLESSQEISDHDSLPSTVRDELLDH 249
           IS IK  GL+DPLLS E+A   L  +TKN+S TKS+L  S + S  D LP+T +++LLDH
Sbjct: 436 ISNIKTMGLRDPLLSHEVAFKVLSELTKNISSTKSNLGKSSQESVLDILPNTTKEKLLDH 495

Query: 250 WRCSQELLRHFWSSYPITARDLINKTER--GYISNIF 284
           W CSQELLRHFWSSYP+T + L++K  R    IS I+
Sbjct: 496 WVCSQELLRHFWSSYPVTKQSLVDKARRLKDAISQIY 532


>Medtr6g071555.1 | TFIIH basal transcription factor complex subunit,
           putative | HC | chr6:26537866-26536124 | 20130731
          Length = 580

 Score =  308 bits (790), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 167/275 (60%), Positives = 194/275 (70%), Gaps = 32/275 (11%)

Query: 34  LFLKDGEILQVEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKEIPEAQHPLYRR 93
           +FLKD EIL+ EARKKVRR+DPTLDMEADQGDDYTHLPDHGIFRDG KE  EAQ+ LYRR
Sbjct: 260 VFLKDDEILKNEARKKVRRIDPTLDMEADQGDDYTHLPDHGIFRDGCKETSEAQNTLYRR 319

Query: 94  TLLQDLNRQGALVLEGKTLDIMEMEH-----------IHESVGVREEARRNIFSKMTQIE 142
           TLLQDLNRQ  +VLEGKTLDI +MEH            HES GV EE RRN  SK  QIE
Sbjct: 320 TLLQDLNRQSEVVLEGKTLDI-DMEHPRTEVEVLARRKHESDGVVEE-RRNRISKTAQIE 377

Query: 143 DLQAQDNHPFAPLCVKDPRDYFGSQQANV-----------EQTRGSLGSDKEAYGYLRAS 191
           DLQAQDNHPF PLC+KDPRDYF SQQANV           E+ R +LGS+ EAY  LR S
Sbjct: 378 DLQAQDNHPFVPLCIKDPRDYFDSQQANVVKTFDESLADKEKIRRNLGSE-EAYDSLRES 436

Query: 192 ISKIKAKGLKDPLLSSEIALNGLMTKNVSGTKSHLESSQEISDHDSLPSTVRDELLDHWR 251
           IS IK  GL+DPLLS ++A   L   N S + +  E   +I     LP++ +++LLDHW 
Sbjct: 437 ISNIKTMGLRDPLLSHKVAFKVLTVLNKSISSTTKECVLDI-----LPNSTKEKLLDHWV 491

Query: 252 CSQELLRHFWSSYPITARDLINKTER--GYISNIF 284
           CSQELLRHFWSSYP++ + L++K  R    IS I+
Sbjct: 492 CSQELLRHFWSSYPVSTQSLVSKATRLKDAISQIY 526