Miyakogusa Predicted Gene

Lj3g3v0630330.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0630330.1 Non Characterized Hit- tr|B7FHB1|B7FHB1_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,66.15,0.0000000000001, ,79404_g.1
         (56 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g009670.1 | nuclear protein E3-3, putative | HC | chr8:234...    80   3e-16

>Medtr8g009670.1 | nuclear protein E3-3, putative | HC |
          chr8:2348994-2345053 | 20130731
          Length = 177

 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/65 (66%), Positives = 52/65 (80%), Gaps = 9/65 (13%)

Query: 1  MSIKQR----LPNLIRTLRNEQPLK----PQQN-HALPSLRRAFSLYDQINVIDKLPDDQ 51
          M+++QR    LPNLIR+LRNE PLK    P  N ++LPSLRRAFSLYDQIN+ID +P+DQ
Sbjct: 1  MAVRQRAVTALPNLIRSLRNEHPLKLKPSPHNNPNSLPSLRRAFSLYDQINLIDNVPEDQ 60

Query: 52 LRFQG 56
          LRFQG
Sbjct: 61 LRFQG 65