Miyakogusa Predicted Gene

Lj3g3v0044280.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0044280.1 Non Characterized Hit- tr|C6T351|C6T351_SOYBN
Uncharacterized protein OS=Glycine max PE=2 SV=1,54.4,2e-17,
,CUFF.40238.1
         (116 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g104040.1 | transmembrane protein, putative | HC | chr2:44...    80   4e-16

>Medtr2g104040.1 | transmembrane protein, putative | HC |
           chr2:44819349-44818668 | 20130731
          Length = 127

 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/134 (47%), Positives = 76/134 (56%), Gaps = 32/134 (23%)

Query: 1   MAVSV---VGGGWRF-LCH-----RREN--PPNSPLFLQSPMPIRFSTTTTSWSCVIPRA 49
           MAVSV   VG G  +  C+     RR N   PN+ L      P R       WS V+ RA
Sbjct: 1   MAVSVSEIVGLGSTYGYCNLSRFRRRVNVTSPNTTLISSIIFPTR-----RKWSSVVVRA 55

Query: 50  RDPKTGEQNSTNTSQVEDLVYVAKLAAGSFVGAG----------EITTPNLVLALSIILT 99
           ++      +ST +SQ ED+VY+AKL  GSF GAG          EITTPNLVLAL II T
Sbjct: 56  QN------SSTYSSQKEDIVYLAKLVVGSFGGAGVIKYGSAIFPEITTPNLVLALVIIST 109

Query: 100 PVVVAVLLLIKESL 113
           PV+VAVLLLI +SL
Sbjct: 110 PVLVAVLLLINQSL 123