Miyakogusa Predicted Gene

Lj2g3v3337770.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3337770.1 Non Characterized Hit- tr|J3NCC2|J3NCC2_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB12G1,34.44,4e-17,FAS1 domain,FAS1 domain; no description,FAS1
domain; seg,NULL; FAS1,FAS1 domain; Fasciclin,FAS1 doma,77893_g.1
         (163 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g097370.1 | fasciclin-like arabinogalactan protein | HC | ...   194   3e-50
Medtr4g099150.1 | fasciclin domain protein | LC | chr4:41062867-...    80   1e-15
Medtr2g026520.1 | fasciclin-like arabinogalactan family protein,...    59   2e-09

>Medtr5g097370.1 | fasciclin-like arabinogalactan protein | HC |
           chr5:42650583-42650002 | 20130731
          Length = 193

 Score =  194 bits (494), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 100/159 (62%), Positives = 114/159 (71%)

Query: 1   MSDMRSRSYYGFVILLKILNSQPNSLQNNDLTFLMPSDEQLSQFSITPDELHDFLLSHSI 60
           MSDM+SRSYYGFVILLKILNS PN +QNNDLTFLMP+DE LS FSI P+ELHDFLLSHSI
Sbjct: 33  MSDMQSRSYYGFVILLKILNSLPNQMQNNDLTFLMPNDEDLSHFSIAPEELHDFLLSHSI 92

Query: 61  PTXXXXXXXXXXXXGXXXXXXXXXXXXXXTNSGRSGLFVNNARIVTPNVCQTSSIRCHGI 120
           PT            G              TN+ R+GLFVNNARIVTPNVCQ S I+CHGI
Sbjct: 93  PTPLLLNHLLHFPNGSIVPSGLPSKVISITNNARAGLFVNNARIVTPNVCQNSLIKCHGI 152

Query: 121 SAALTFGSNVPSHHAPERKDPPKNSDVRNPVPSVKKTSI 159
           SAALTF +++P    PE KDP KNS+  +P PS++K SI
Sbjct: 153 SAALTFENSLPFQRVPEPKDPSKNSNDTHPNPSMRKMSI 191


>Medtr4g099150.1 | fasciclin domain protein | LC |
           chr4:41062867-41062127 | 20130731
          Length = 246

 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 3/141 (2%)

Query: 3   DMRSRSYYGFVILLKILNSQPNSLQNNDLTFLMPSDEQLSQFSITPDELHDFLLSHSIPT 62
           +M+  +Y+ FV+L+K+  S P++    ++TFLMP+D  L+  ++  + +  FLL HSIP+
Sbjct: 33  EMQRANYFTFVMLIKM--SPPDTRLEGNVTFLMPNDRMLANVTLQEESVSKFLLRHSIPS 90

Query: 63  XXXXXXXXXXXXGXXXXXXXXXXXXXXTNSGRSGLFVNNARIVTPNVCQT-SSIRCHGIS 121
                       G              +N+GR    VNN +I++PN+C + SSIRCHGI 
Sbjct: 91  PLLFDTLKQFPSGTTVPSLLPNCIMRISNNGRKNFVVNNVKIISPNICVSGSSIRCHGID 150

Query: 122 AALTFGSNVPSHHAPERKDPP 142
             L+    + ++H      PP
Sbjct: 151 GVLSQTCTLENNHNHGVPIPP 171


>Medtr2g026520.1 | fasciclin-like arabinogalactan family protein,
          putative | HC | chr2:9590272-9589841 | 20130731
          Length = 143

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 44/63 (69%), Gaps = 6/63 (9%)

Query: 1  MSDMRSRSYYGFVILLKILN--SQPNSLQNNDLTFLMPSDEQLSQFSITPDELHDFLLSH 58
          + DMR++ +YGF +LL++LN  SQP      +LTF MP D +LS  +I+ + + DF+LSH
Sbjct: 35 IGDMRAKIFYGFAMLLQMLNGTSQPI----RELTFFMPGDRELSASAISANGIEDFILSH 90

Query: 59 SIP 61
          +IP
Sbjct: 91 AIP 93