Miyakogusa Predicted Gene
- Lj2g3v3224280.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v3224280.2 Non Characterized Hit- tr|I0Z2I3|I0Z2I3_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,29.48,2e-17,DNMT1-RFD,DNA (cytosine-5)-methyltransferase 1,
replication foci domain; FYVE/PHD zinc finger,Zinc f,CUFF.39900.2
(466 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g055370.1 | enhanced downy mildew protein | HC | chr3:2176... 548 e-156
Medtr5g094150.1 | cytosine specific DNA methyltransferase replic... 547 e-156
Medtr8g009000.1 | enhanced downy mildew protein | HC | chr8:1979... 244 1e-64
Medtr8g009000.2 | enhanced downy mildew protein | HC | chr8:1980... 244 1e-64
>Medtr3g055370.1 | enhanced downy mildew protein | HC |
chr3:21767843-21780507 | 20130731
Length = 1245
Score = 548 bits (1411), Expect = e-156, Method: Compositional matrix adjust.
Identities = 269/449 (59%), Positives = 333/449 (74%), Gaps = 14/449 (3%)
Query: 24 NYHLEDDDEVPVCFSVLPVQWGGGDSERSIDACKEEVFLHGSTDNGLQKVFMQVTAWRFD 83
NYH DD + PV FS+LP+QW +S ++ KE+VFLHG+ DNGLQK+FMQV AWRFD
Sbjct: 17 NYHFVDDKDAPVTFSILPIQWSESES---VEGKKEKVFLHGNADNGLQKIFMQVVAWRFD 73
Query: 84 LSPVKPEVSLLSKDGKWVKLDKPRKSFQDTVRTILVTLHFLHSLKKNRRLSAKSVWNSLS 143
LS VKPE+S+L+KD +W+KL KPRKS+++ VR++L+T++F+H ++KN KSVW++LS
Sbjct: 74 LSNVKPEISVLAKDKRWIKLQKPRKSYEEIVRSVLITVYFMHYVRKNPEALGKSVWDNLS 133
Query: 144 KDKELSFCELKPSQKDLLDHVTLIGEAAKRDAVLAKSKLLLMVMEEKRKNG--KLSVEEA 201
K+K+ S E+KPS DLL+H+ L+GEAA RDAVLAKSKLLLMVME+K + KLS EE
Sbjct: 134 KNKDFSHYEVKPSHNDLLNHMGLMGEAATRDAVLAKSKLLLMVMEDKDRMSIKKLSDEEV 193
Query: 202 KDLARPEFIVDDIGNXXXXXXXXXXXXXXXSSY---TVCALCDNGGALLCCDGECMRSFH 258
K+LARP FI+ D + +VC+ CDNGG LLCC+G+CMRSFH
Sbjct: 194 KELARPGFIIADDIDNDAIDETVAEEESDEEDELFDSVCSFCDNGGELLCCEGKCMRSFH 253
Query: 259 ATKADGKDSDCFSLGLTRKEVDDIKTFYCKNCKYHQHQCFACGELGSSDKAKGAKVFKCA 318
A + DG++S C SLG +RKEV++I+ FYCKNC++++HQCFACGELG SDK GA+VFKCA
Sbjct: 254 ANEEDGEESSCASLGFSRKEVEEIQNFYCKNCEHNKHQCFACGELGCSDKFAGAEVFKCA 313
Query: 319 -ATCDCFYHPHCVAKLLSGVVKLAATELERNIANGDPFTCPVHYCHVCKEEENAVEPELQ 377
ATC FYHP CVAKLL V+ A TEL NIA G+PFTCP HYC +CKE EN E EL
Sbjct: 314 SATCGFFYHPQCVAKLLHLVISDAPTELVTNIAKGEPFTCPAHYCRICKEMENKNEHELH 373
Query: 378 FAVCRRCPKSYHRKCLPRNIAFECTDDGHTLQRAWEGLLPNNRILIYCLKHKIDDELGTP 437
FAVCRRCPKSYHRKCLPR +AFE + + RAWE LLPNNRILIYCLKH+IDDELGTP
Sbjct: 374 FAVCRRCPKSYHRKCLPRKVAFEDIVEEGIVARAWEDLLPNNRILIYCLKHEIDDELGTP 433
Query: 438 IRNHIKFPITK-----ATVREINTPNKRM 461
IR+HIKFP K AT IN N ++
Sbjct: 434 IRDHIKFPYVKQKAKPATKEVINNNNAKL 462
>Medtr5g094150.1 | cytosine specific DNA methyltransferase
replication foci domain protein | LC |
chr5:41126697-41118549 | 20130731
Length = 1169
Score = 547 bits (1410), Expect = e-156, Method: Compositional matrix adjust.
Identities = 271/444 (61%), Positives = 325/444 (73%), Gaps = 19/444 (4%)
Query: 24 NYHLEDDDEVPVCFSVLPVQWGGGDSERSIDACKE-EVFLHGSTDNGLQKVFMQVTAWRF 82
NYHLED+D PVCFSVLP +WG + D K ++FLHGS DNGLQ +FM+VTAW+F
Sbjct: 25 NYHLEDNDGEPVCFSVLPFKWGASKVSKVDDTEKGLKIFLHGSADNGLQTIFMEVTAWKF 84
Query: 83 DLSPVKPEVSLLSKDGKWVKLDKPRKSFQDTVRTILVTLHFLHSLKKNRRLSAKSVWNSL 142
DL+ +KPEVSLLSKD +W+KL KPRKSFQ TV+ L+TL+FL KKN RLS +S W ++
Sbjct: 85 DLTGLKPEVSLLSKDKRWIKLQKPRKSFQKTVKNALITLYFLRCAKKNPRLSVESFWCNV 144
Query: 143 SKDKELSFCELKPSQKDLLDHVTLIGEAAKRDAVLAKSKLLLMVMEEKRKNGKLSVEEAK 202
KDK+LS KPSQKDLLDH++LIGEA RD LA SKLLL V+ +K + K S EE
Sbjct: 145 CKDKDLSSYGFKPSQKDLLDHMSLIGEATTRDVGLANSKLLLSVLGDKSGDQKPSDEEF- 203
Query: 203 DLARPEFIVDDIGNXXXXXXXXXXXXXXXSSYTVCALCDNGGALLCCDGECMRSFHATKA 262
D N + CALCDNGG L+ CDG CMRSFHATK
Sbjct: 204 ----------DTNNDIIEESDEDSKVEDDLFDSFCALCDNGGNLIMCDGACMRSFHATKV 253
Query: 263 DGKDSDCFSLGLTRKEVDDIKTFYCKNCKYHQHQCFACGELGSSDKAKGAKVFKCAA-TC 321
DG++S C SLG T+KEVDDI+TFYCKNC+YHQHQCFACGELGSSDK K A+VFKCA+ TC
Sbjct: 254 DGRESLCDSLGFTKKEVDDIETFYCKNCEYHQHQCFACGELGSSDKDKDAEVFKCASETC 313
Query: 322 DCFYHPHCVAKLLSGVVKLAATELERNIANGDPFTCPVHYCHVCKEEENAVEPELQFAVC 381
D FYHPHC+A L VK + +LE+N A+G F+CP+H+C VC+ EN ++PELQFAVC
Sbjct: 314 DRFYHPHCIAPL----VKHVSEDLEKNNADGQTFSCPIHFCCVCEGLENKMDPELQFAVC 369
Query: 382 RRCPKSYHRKCLPRNIAFECTDDGHTLQRAWEGLLPNNRILIYCLKHKIDDELGTPIRNH 441
RCPKSYHR+CLP IAF+ DD T RAWEGLLPNNRILIYCL H+I DELGTP+R+H
Sbjct: 370 NRCPKSYHRRCLPTEIAFDDIDDVAT--RAWEGLLPNNRILIYCLNHEISDELGTPVRDH 427
Query: 442 IKFPITKATVREINTPNKRMKRAT 465
IKFP T+A+VR+INTP+K+MK T
Sbjct: 428 IKFPDTRASVRDINTPDKKMKPTT 451
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 353 DPFTCPVHYCHVCKEEENAVEPELQFAVCRRCPKSYHRKCLPRNIAFECTDDGHTLQRA- 411
D PV H+ + A PE+ + R P + R L N+ F + T + +
Sbjct: 576 DKLETPVRD-HIKFPDTRATVPEINTSSKRMRPTTTERVELKNNVGFVKSSGKSTAEGSK 634
Query: 412 WEGLLPNNRILIYCLKHKIDDELGTPIRNHIKFPITKATVREINTPNKRMKRAT 465
G LP+++I + D+L TP+R+H KFP T+ATV EINT NKRM+ T
Sbjct: 635 VTGKLPSSKIGSKKSFEETSDKLETPVRDHTKFPDTRATVPEINTSNKRMRPTT 688
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 363 HVCKEEENAVEPELQFAVCRRCPKSYHRKCLPRNIAFECTDDGHTLQRA-WEGLLPNNRI 421
H+ + A PE+ + R P + R L N+ F + T + + G LP+++I
Sbjct: 506 HIKFPDTRATVPEINTSNKRMRPTTTERVELKNNVGFVKSSGKSTAEGSKVTGKLPSSKI 565
Query: 422 LIYCLKHKIDDELGTPIRNHIKFPITKATVREINTPNKRMKRAT 465
+ D+L TP+R+HIKFP T+ATV EINT +KRM+ T
Sbjct: 566 GSKKSPEETSDKLETPVRDHIKFPDTRATVPEINTSSKRMRPTT 609
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 396 NIAFECTDDGHTLQRA-WEGLLPNNRILIYCLKHKIDDELGTPIRNHIKFPITKATVREI 454
N+ F + D T + + G LP+++I + D+L T +R+HIKFP T+ATV EI
Sbjct: 460 NVDFVKSSDKSTAEGSKVTGKLPSSKIGSKKSSGETSDKLDTSVRDHIKFPDTRATVPEI 519
Query: 455 NTPNKRMKRAT 465
NT NKRM+ T
Sbjct: 520 NTSNKRMRPTT 530
>Medtr8g009000.1 | enhanced downy mildew protein | HC |
chr8:1979212-1970413 | 20130731
Length = 1035
Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 115/223 (51%), Positives = 152/223 (68%), Gaps = 2/223 (0%)
Query: 235 TVCALCDNGGALLCCDGECMRSFHATKADGKDSDCFSLGLTRKEVDDIKTFYCKNCKYHQ 294
TVCA+CDNGG +L C+G C+RSFHAT DG+DS C SLG TR EV+ FYC+NCK+ +
Sbjct: 312 TVCAICDNGGEILPCEGRCLRSFHATLEDGRDSLCASLGYTRTEVNAFPNFYCENCKHKK 371
Query: 295 HQCFACGELGSSDKAKGAKVFKCA-ATCDCFYHPHCVAKLLSGVVKLAATELERNIANGD 353
HQCFACG+LGSSD++ +VF C A C +YHP CVA+LL + + E+ + I
Sbjct: 372 HQCFACGKLGSSDESSNPEVFPCVTANCGHYYHPECVARLLYPGIDIGQEEMRKRIIIEK 431
Query: 354 PFTCPVHYCHVCKEEENAVEPELQFAVCRRCPKSYHRKCLPRNIAFECTDDGHTLQRAWE 413
F CP+H C +C++ EN +LQFA+CRRCPK+YHRKCLP+ I+F RAW+
Sbjct: 432 TFVCPLHICSLCRKGENRNVHDLQFAMCRRCPKAYHRKCLPKEISFTYDYYTGIEMRAWD 491
Query: 414 GLLPNNRILIYCLKHKIDDELGTPIRNHIKFPITKATVREINT 456
LL + RIL+YC+ HKI ELGTP R+H+ FP + + I+T
Sbjct: 492 NLL-DKRILMYCMNHKIVLELGTPARDHLIFPNKEVKRKIIST 533
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 89/136 (65%), Gaps = 2/136 (1%)
Query: 59 EVFLHGSTDNGLQKVFMQVTAWRFDLSPVKPEVSLLSKDGKWVKLDKPRKSFQDTVRTIL 118
+VFL G+TDNGLQK+ Q+ WRF+LS +PE+S+L ++ W+ L KP K F++T+R++L
Sbjct: 49 KVFLRGTTDNGLQKIHKQIIGWRFELSFEQPEISVLLREKYWMTLLKPSKCFENTIRSVL 108
Query: 119 VTLHFLHSLKKNRRLSAKSVWNSLSKDKELSFCELKPSQKDLLDHVTLIGEAAKRDAVLA 178
VT+++LH +K S S+ + KE S ++ PS+ D+L H+ LI EA KRD L
Sbjct: 109 VTVYWLHCVKWKPEESRASILVKVL--KEFSSFDITPSENDVLCHMALISEAVKRDTDLT 166
Query: 179 KSKLLLMVMEEKRKNG 194
KSK LL + + NG
Sbjct: 167 KSKYLLNFIGKTCSNG 182
>Medtr8g009000.2 | enhanced downy mildew protein | HC |
chr8:1980078-1970212 | 20130731
Length = 1035
Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 115/223 (51%), Positives = 152/223 (68%), Gaps = 2/223 (0%)
Query: 235 TVCALCDNGGALLCCDGECMRSFHATKADGKDSDCFSLGLTRKEVDDIKTFYCKNCKYHQ 294
TVCA+CDNGG +L C+G C+RSFHAT DG+DS C SLG TR EV+ FYC+NCK+ +
Sbjct: 312 TVCAICDNGGEILPCEGRCLRSFHATLEDGRDSLCASLGYTRTEVNAFPNFYCENCKHKK 371
Query: 295 HQCFACGELGSSDKAKGAKVFKCA-ATCDCFYHPHCVAKLLSGVVKLAATELERNIANGD 353
HQCFACG+LGSSD++ +VF C A C +YHP CVA+LL + + E+ + I
Sbjct: 372 HQCFACGKLGSSDESSNPEVFPCVTANCGHYYHPECVARLLYPGIDIGQEEMRKRIIIEK 431
Query: 354 PFTCPVHYCHVCKEEENAVEPELQFAVCRRCPKSYHRKCLPRNIAFECTDDGHTLQRAWE 413
F CP+H C +C++ EN +LQFA+CRRCPK+YHRKCLP+ I+F RAW+
Sbjct: 432 TFVCPLHICSLCRKGENRNVHDLQFAMCRRCPKAYHRKCLPKEISFTYDYYTGIEMRAWD 491
Query: 414 GLLPNNRILIYCLKHKIDDELGTPIRNHIKFPITKATVREINT 456
LL + RIL+YC+ HKI ELGTP R+H+ FP + + I+T
Sbjct: 492 NLL-DKRILMYCMNHKIVLELGTPARDHLIFPNKEVKRKIIST 533
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 89/136 (65%), Gaps = 2/136 (1%)
Query: 59 EVFLHGSTDNGLQKVFMQVTAWRFDLSPVKPEVSLLSKDGKWVKLDKPRKSFQDTVRTIL 118
+VFL G+TDNGLQK+ Q+ WRF+LS +PE+S+L ++ W+ L KP K F++T+R++L
Sbjct: 49 KVFLRGTTDNGLQKIHKQIIGWRFELSFEQPEISVLLREKYWMTLLKPSKCFENTIRSVL 108
Query: 119 VTLHFLHSLKKNRRLSAKSVWNSLSKDKELSFCELKPSQKDLLDHVTLIGEAAKRDAVLA 178
VT+++LH +K S S+ + KE S ++ PS+ D+L H+ LI EA KRD L
Sbjct: 109 VTVYWLHCVKWKPEESRASILVKVL--KEFSSFDITPSENDVLCHMALISEAVKRDTDLT 166
Query: 179 KSKLLLMVMEEKRKNG 194
KSK LL + + NG
Sbjct: 167 KSKYLLNFIGKTCSNG 182