Miyakogusa Predicted Gene

Lj2g3v2124250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2124250.1 Non Characterized Hit- tr|D8R129|D8R129_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,60.53,1e-18,seg,NULL; Complex1_LYR,Complex 1 LYR
protein,CUFF.38581.1
         (91 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g008340.1 | complex 1 protein, LYR family protein | HC | c...   127   2e-30

>Medtr5g008340.1 | complex 1 protein, LYR family protein | HC |
          chr5:1752771-1753559 | 20130731
          Length = 93

 Score =  127 bits (319), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/87 (74%), Positives = 68/87 (78%)

Query: 3  VQRLSGMQKQVLSLYRGFLXXXXXXXXXXXXNMESIVSQEFRRNSKEVDRKNFLYIEYLL 62
          VQRLSGMQKQVLSLYRGFL            N+ESIVSQEFR NSKEVDRKNF YIEYLL
Sbjct: 6  VQRLSGMQKQVLSLYRGFLRAARSKPDQERRNIESIVSQEFRHNSKEVDRKNFQYIEYLL 65

Query: 63 RRGTRQLDQLKNPGTTGLSSLQVDLSK 89
          RRG +QLDQL NPGTTGLSSLQ+   K
Sbjct: 66 RRGHKQLDQLNNPGTTGLSSLQLHFPK 92